Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013585A_C01 KMC013585A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD39674.1|AC007591_39 Strong similarity to gb|X95263 Periodi... 41 0.010
ref|NP_172998.1| hypothetical protein; protein id: At1g15440.1, ... 41 0.010
emb|CAB40614.1| SNF2-like helicase [Bacillus cereus] 33 2.1
>gb|AAD39674.1|AC007591_39 Strong similarity to gb|X95263 Periodic tryptophan protein 2 gene
(PWP2) from Homo sapiens and contains 6 WD40, G-beta
repeat domains. [Arabidopsis thaliana]
Length = 893
Score = 41.2 bits (95), Expect = 0.010
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -3
Query: 588 HQDLADTCSSNEYMLQYLCS 529
HQDLAD CSSNEY L+YLCS
Sbjct: 869 HQDLADMCSSNEYTLRYLCS 888
>ref|NP_172998.1| hypothetical protein; protein id: At1g15440.1, supported by cDNA:
gi_17529277 [Arabidopsis thaliana]
gi|17529278|gb|AAL38866.1| unknown protein [Arabidopsis
thaliana] gi|22136988|gb|AAM91723.1| unknown protein
[Arabidopsis thaliana]
Length = 900
Score = 41.2 bits (95), Expect = 0.010
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -3
Query: 588 HQDLADTCSSNEYMLQYLCS 529
HQDLAD CSSNEY L+YLCS
Sbjct: 876 HQDLADMCSSNEYTLRYLCS 895
>emb|CAB40614.1| SNF2-like helicase [Bacillus cereus]
Length = 631
Score = 33.5 bits (75), Expect = 2.1
Identities = 24/66 (36%), Positives = 34/66 (51%)
Frame = +3
Query: 249 LQLGHEQT*RSHLTGTKIGTSFKDILLHIHWDALYTAEYAMWLRYIKILLDSSKVAMMLS 428
L LG + R LTGT I S+KDI +H LY EY + R+ L++ +V + +
Sbjct: 283 LNLGPKSQYRYVLTGTPIPNSYKDIYNFLH--LLYDKEYDSFFRWEVSDLENPEVEEINN 340
Query: 429 RQQVIF 446
R Q F
Sbjct: 341 RIQPFF 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,115,895
Number of Sequences: 1393205
Number of extensions: 8141563
Number of successful extensions: 17044
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17043
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
