Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013584A_C01 KMC013584A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02039 acidic ribosomal protein P1a - maize gi|2431769|gb|A... 148 4e-35
sp|P52855|RLA1_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P1 (L12) gi|74... 147 6e-35
gb|AAM62534.1| 60S acidic ribosomal protein P1-like protein [Ara... 137 8e-32
ref|NP_199581.1| 60S acidic ribosomal protein P1-like protein; p... 137 1e-31
sp|P29763|RLA1_CHLRE 60S ACIDIC RIBOSOMAL PROTEIN P1 gi|71168|pi... 133 1e-30
>pir||T02039 acidic ribosomal protein P1a - maize gi|2431769|gb|AAB71079.1|
acidic ribosomal protein P1a [Zea mays]
Length = 109
Score = 148 bits (374), Expect = 4e-35
Identities = 78/113 (69%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -2
Query: 532 MSAGELGCIYATWILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 353
M++GEL C YA IL DDGI ITAEKI T++KAAN+ VESYWP+LFAKL + +NV+DL+L
Sbjct: 1 MASGELACTYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60
Query: 352 NAGVASGAA-VAVSAPGAAAGGGDAAAAAPAKEEKKEEAKEESDDDMGFSLFD 197
+ G GAA VA +AP GG AAAAAPA EEKKEEAKEESDDDMGFSLFD
Sbjct: 61 SVGSGGGAAPVAAAAP----AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
>sp|P52855|RLA1_MAIZE 60S ACIDIC RIBOSOMAL PROTEIN P1 (L12) gi|7440758|pir||T02716 acidic
ribosomal protein P1 - maize gi|1209701|gb|AAA91168.1|
ribosomal protein L12
Length = 109
Score = 147 bits (372), Expect = 6e-35
Identities = 78/113 (69%), Positives = 90/113 (79%), Gaps = 1/113 (0%)
Frame = -2
Query: 532 MSAGELGCIYATWILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 353
M++GEL C YA IL DDGI ITAEKI T++KAAN+ VESYWP+LFAKL + +NV+DL+L
Sbjct: 1 MASGELACRYAALILSDDGIAITAEKIATIVKAANIKVESYWPALFAKLLEKRNVEDLIL 60
Query: 352 NAGVASGAA-VAVSAPGAAAGGGDAAAAAPAKEEKKEEAKEESDDDMGFSLFD 197
+ G GAA VA +AP GG AAAAAPA EEKKEEAKEESDDDMGFSLFD
Sbjct: 61 SVGSGGGAAPVAAAAP----AGGAAAAAAPAVEEKKEEAKEESDDDMGFSLFD 109
>gb|AAM62534.1| 60S acidic ribosomal protein P1-like protein [Arabidopsis thaliana]
Length = 113
Score = 137 bits (345), Expect = 8e-32
Identities = 66/111 (59%), Positives = 81/111 (72%)
Frame = -2
Query: 529 SAGELGCIYATWILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 350
+ GEL C YA IL D+GI ITA+KI TL+KAA VT+ESYWP LFAK+A+ +NV DL++N
Sbjct: 3 TVGELACXYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62
Query: 349 AGVASGAAVAVSAPGAAAGGGDAAAAAPAKEEKKEEAKEESDDDMGFSLFD 197
G G V+A AAGGG AAAA A+E+KK+E EESD D+GF LFD
Sbjct: 63 VGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113
>ref|NP_199581.1| 60S acidic ribosomal protein P1-like protein; protein id:
At5g47700.1, supported by cDNA: 14401., supported by
cDNA: gi_17979076, supported by cDNA: gi_20465332
[Arabidopsis thaliana] gi|10177906|dbj|BAB11317.1| 60S
acidic ribosomal protein P1-like protein [Arabidopsis
thaliana] gi|17979077|gb|AAL49806.1| putative 60S acidic
ribosomal protein P1 [Arabidopsis thaliana]
gi|20465333|gb|AAM20070.1| putative 60S acidic ribosomal
protein P1 [Arabidopsis thaliana]
Length = 113
Score = 137 bits (344), Expect = 1e-31
Identities = 66/111 (59%), Positives = 81/111 (72%)
Frame = -2
Query: 529 SAGELGCIYATWILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVLN 350
+ GEL C YA IL D+GI ITA+KI TL+KAA VT+ESYWP LFAK+A+ +NV DL++N
Sbjct: 3 TVGELACSYAVMILEDEGIAITADKIATLVKAAGVTIESYWPMLFAKMAEKRNVTDLIMN 62
Query: 349 AGVASGAAVAVSAPGAAAGGGDAAAAAPAKEEKKEEAKEESDDDMGFSLFD 197
G G V+A AAGGG AAAA A+E+KK+E EESD D+GF LFD
Sbjct: 63 VGAGGGGGAPVAAAAPAAGGGAAAAAPAAEEKKKDEPAEESDGDLGFGLFD 113
>sp|P29763|RLA1_CHLRE 60S ACIDIC RIBOSOMAL PROTEIN P1 gi|71168|pir||R6KM1C acidic
ribosomal protein P1, cytosolic - Chlamydomonas
reinhardtii gi|18211|emb|CAA47042.1| ribosomal protein
P1 [Chlamydomonas reinhardtii]
Length = 107
Score = 133 bits (335), Expect = 1e-30
Identities = 70/112 (62%), Positives = 80/112 (70%)
Frame = -2
Query: 532 MSAGELGCIYATWILHDDGIPITAEKINTLLKAANVTVESYWPSLFAKLAQNKNVDDLVL 353
MS EL C YA ILHDDG+ ITA+ INT+ KAA V VE YWP+LFAKL K++DDL+
Sbjct: 1 MSTSELACTYAALILHDDGLEITADNINTICKAAGVEVEGYWPALFAKLFAKKSMDDLIT 60
Query: 352 NAGVASGAAVAVSAPGAAAGGGDAAAAAPAKEEKKEEAKEESDDDMGFSLFD 197
N G GAA A +AP AAGG AA AAP KEEKKE ++EE DMGFSLFD
Sbjct: 61 NVGAGGGAAPAAAAP--AAGGAPAAGAAPKKEEKKEPSEEE---DMGFSLFD 107
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,068,575
Number of Sequences: 1393205
Number of extensions: 11147416
Number of successful extensions: 112954
Number of sequences better than 10.0: 933
Number of HSP's better than 10.0 without gapping: 75717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106680
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
