Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013567A_C01 KMC013567A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S38811 hypothetical protein - fruit fly (Drosophila heteron... 36 0.45
emb|CAA44764.1| Uhu [Drosophila heteroneura] 36 0.45
emb|CAA35234.1| open reading frame (AA 1-192) [Drosophila hetero... 34 1.7
>pir||S38811 hypothetical protein - fruit fly (Drosophila heteroneura)
transposon Uhu4
Length = 251
Score = 35.8 bits (81), Expect = 0.45
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +2
Query: 347 TCYFKDEKGFVTFGTEFHLYVSRKAWKRINATHMVALIRLGSGS 478
T F+DE F+ FG++ YV R++ +N H+ A ++ G GS
Sbjct: 147 TIIFEDESKFIIFGSDGRNYVWRQSNTELNPKHLKATVKHGGGS 190
>emb|CAA44764.1| Uhu [Drosophila heteroneura]
Length = 251
Score = 35.8 bits (81), Expect = 0.45
Identities = 16/44 (36%), Positives = 26/44 (58%)
Frame = +2
Query: 347 TCYFKDEKGFVTFGTEFHLYVSRKAWKRINATHMVALIRLGSGS 478
T F+DE F+ FG++ YV R++ +N H+ A ++ G GS
Sbjct: 147 TIIFEDESKFIIFGSDGRNYVWRQSNTELNPKHLKATVKHGGGS 190
>emb|CAA35234.1| open reading frame (AA 1-192) [Drosophila heteroneura]
Length = 192
Score = 33.9 bits (76), Expect = 1.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +2
Query: 347 TCYFKDEKGFVTFGTEFHLYVSRKAWKRINATHMVALIRLGSGS 478
T F+DE F+ FG++ YV R++ +N ++ A ++ G GS
Sbjct: 119 TIIFEDESKFIIFGSDGRNYVRRQSNTELNPKNLKATVKHGGGS 162
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 529,775,918
Number of Sequences: 1393205
Number of extensions: 11153573
Number of successful extensions: 23869
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23859
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
