Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013552A_C01 KMC013552A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_741676.1| Eukaryotic aspartyl protease family member [Cae... 35 1.0
ref|XP_150841.1| hypothetical protein XP_150841 [Mus musculus] 33 2.3
ref|NP_764603.1| putative anthranilate synthase component I [Sta... 33 3.9
ref|NP_221056.1| PROBABLE TRANSPORT ATP-BINDING PROTEIN MSBA (ms... 32 5.0
gb|AAL35543.1| novel immune-type receptor 2 [Ictalurus punctatus... 32 5.0
>ref|NP_741676.1| Eukaryotic aspartyl protease family member [Caenorhabditis elegans]
gi|21038843|emb|CAD31818.1| Hypothetical protein
Y39B6A.21 [Caenorhabditis elegans]
Length = 431
Score = 34.7 bits (78), Expect = 1.0
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Frame = -3
Query: 197 LCKM*ILLCYC----CHVK*LLGYLGYGQCYQIQDFIFLLLMWVCHALYVGVYFKCTLCL 30
+C M ++CY C++ ++ Y+ YG CY + ++L + +C+ +YV Y +C
Sbjct: 295 ICYMLYVICYMLYVICYMLYVICYMLYGICYMLYVICYMLYV-ICYMVYVICYMLYVICY 353
Query: 29 SHLYV 15
LYV
Sbjct: 354 M-LYV 357
Score = 33.5 bits (75), Expect = 2.3
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = -3
Query: 224 GTWSDFFTALCKM*ILLCYCCHVK*LLGYLGYGQCYQIQDFIFLLLMWVCHALYVGVYFK 45
G++S+ TA K+ +LC C++ ++ Y+ Y CY + ++L + +C+ LYV Y
Sbjct: 264 GSFSETKTA--KVMYMLCGICYMLYVICYMLYVICYMLYVICYMLYV-ICYMLYVICYML 320
Query: 44 CTLCLSHLYV 15
+C LYV
Sbjct: 321 YGICYM-LYV 329
>ref|XP_150841.1| hypothetical protein XP_150841 [Mus musculus]
Length = 361
Score = 33.5 bits (75), Expect = 2.3
Identities = 17/56 (30%), Positives = 28/56 (49%)
Frame = -1
Query: 223 GPGLIFSQLCVRCEFCCAIVVMLSNYWDIWAMVSATRFKILFSFCLCGFVMPFMLE 56
GPG ++C E C +I +SNY + T++K+ S C CG + P + +
Sbjct: 313 GPGA-GCRMCSLAEACSSICTSISNY------AAVTQYKVKMSLCNCGLLPPLVTQ 361
>ref|NP_764603.1| putative anthranilate synthase component I [Staphylococcus
epidermidis ATCC 12228]
gi|27315511|gb|AAO04645.1|AE016747_142 putative
anthranilate synthase component I [Staphylococcus
epidermidis ATCC 12228]
Length = 468
Score = 32.7 bits (73), Expect = 3.9
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Frame = +1
Query: 133 PRYPNNYLT*QQ*HNKIHILHKAVKKSDQVPVIPV*IYKY---YLSNLTLLIFSLFEVLE 303
PR+ ++ QQ I IL K + + D V+P IY Y + NL L F L++ L+
Sbjct: 191 PRHITTNISEQQFVQTIRILKKKITEGDMFQVVPSRIYSYKHHFQHNLHQLTFQLYQNLK 250
Query: 304 LLIVSPLL 327
SP +
Sbjct: 251 RQNPSPYM 258
>ref|NP_221056.1| PROBABLE TRANSPORT ATP-BINDING PROTEIN MSBA (msbA2) [Rickettsia
prowazekii] gi|7430365|pir||B71676 probable ABC
transporter msbA2 - Rickettsia prowazekii
gi|3861232|emb|CAA15132.1| PROBABLE TRANSPORT
ATP-BINDING PROTEIN MSBA (msbA2) [Rickettsia prowazekii]
Length = 576
Score = 32.3 bits (72), Expect = 5.0
Identities = 26/127 (20%), Positives = 56/127 (43%), Gaps = 8/127 (6%)
Frame = +1
Query: 187 ILHKAVKKSDQVPVIPV*IYKYYLSN-------LTLLIFSLFEVLELLIVS-PLLILPID 342
I+ + DQ+ + V +++ N +TL+ F F++ ++I++ P+L++P+
Sbjct: 117 IISRLTNDIDQIATLIVNFLSFFIRNSVMLIGSITLMFFESFKLASIVIITIPILLVPL- 175
Query: 343 ENTAERSCGEISSRDGTCGLIS*RLAELSQFKSDISPSLDNIKLLWSLNIGLVLKCSNDA 522
I L L S SDI + +NI+++++ N + D
Sbjct: 176 ----------IKFGKHVKALSKKALESKSLLVSDIDETFNNIRVIYAFNHQINKIADFDT 225
Query: 523 KMITYFL 543
K+ +Y +
Sbjct: 226 KLQSYLI 232
>gb|AAL35543.1| novel immune-type receptor 2 [Ictalurus punctatus]
gi|17105097|gb|AAL35555.1|AF397467_1 novel immune-type
receptor 2 [Ictalurus punctatus]
Length = 308
Score = 32.3 bits (72), Expect = 5.0
Identities = 17/100 (17%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Frame = -3
Query: 536 YVIILASLEHLRTRPMFRLHRSLILSNDGDMSDLNCESSANL--------YEMSPHVPSL 381
++++L L ++T+ FR + SL+ + +GD +++C +++ Y + +
Sbjct: 6 FILLLCPLHLVKTQTDFRSNDSLVFAKEGDSVNISCIYESDMAMHFSWYKYNLGQKPKLI 65
Query: 380 DDISPHERSAVFSSIGSINSGETISSSRTSKRLKIRSVKL 261
+ +++ A F N+ ++ + ++ L+I+ ++L
Sbjct: 66 SNFYKYDKKATFHHEFKNNARFSMVNEKSKTNLEIKGLQL 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,160,370
Number of Sequences: 1393205
Number of extensions: 10395279
Number of successful extensions: 24339
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24319
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
