Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013550A_C01 KMC013550A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C96682 protein F1E22.16 [imported] - Arabidopsis thaliana g... 72 6e-12
ref|NP_176757.1| hypothetical protein; protein id: At1g65810.1 [... 72 6e-12
ref|NP_176754.1| hypothetical protein; protein id: At1g65780.1 [... 70 2e-11
pir||B96682 protein F1E22.14 [imported] - Arabidopsis thaliana g... 70 2e-11
gb|AAM76346.1|AC074196_4 putative helicase [Oryza sativa (japoni... 63 3e-09
>pir||C96682 protein F1E22.16 [imported] - Arabidopsis thaliana
gi|6686402|gb|AAF23836.1|AC007234_8 F1E22.16 [Arabidopsis
thaliana]
Length = 1075
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = -2
Query: 555 NVAMTRARYSLWILGNAXTLVSSDTVWKQVLLDAKKRDCFHTPDKDNQLARVIEDVVFEL 376
NVA+TRARY LWILGN TL ++ +VW+Q++ DAK R+CFH ++D LA+ IE L
Sbjct: 809 NVALTRARYCLWILGNEATLTNNRSVWRQLVDDAKARNCFHNAEEDESLAQCIERSTTAL 868
Query: 375 QLLEESESMFKKLNLGERS 319
L + ++ KKL E S
Sbjct: 869 DDLNKLQN--KKLISFENS 885
>ref|NP_176757.1| hypothetical protein; protein id: At1g65810.1 [Arabidopsis thaliana]
Length = 1050
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/79 (48%), Positives = 52/79 (65%)
Frame = -2
Query: 555 NVAMTRARYSLWILGNAXTLVSSDTVWKQVLLDAKKRDCFHTPDKDNQLARVIEDVVFEL 376
NVA+TRARY LWILGN TL ++ +VW+Q++ DAK R+CFH ++D LA+ IE L
Sbjct: 784 NVALTRARYCLWILGNEATLTNNRSVWRQLVDDAKARNCFHNAEEDESLAQCIERSTTAL 843
Query: 375 QLLEESESMFKKLNLGERS 319
L + ++ KKL E S
Sbjct: 844 DDLNKLQN--KKLISFENS 860
>ref|NP_176754.1| hypothetical protein; protein id: At1g65780.1 [Arabidopsis
thaliana]
Length = 1065
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/67 (46%), Positives = 45/67 (66%)
Frame = -2
Query: 555 NVAMTRARYSLWILGNAXTLVSSDTVWKQVLLDAKKRDCFHTPDKDNQLARVIEDVVFEL 376
NV +TRAR+ LWILGN TL++S +VW+ ++ DAK+R CFH+ +D LA+ I E
Sbjct: 799 NVLLTRARFCLWILGNEATLMNSKSVWRNLIQDAKERGCFHSAGEDESLAQAIASTNIEF 858
Query: 375 QLLEESE 355
+ L S+
Sbjct: 859 RPLNNSK 865
>pir||B96682 protein F1E22.14 [imported] - Arabidopsis thaliana
gi|6686403|gb|AAF23837.1|AC007234_9 F1E22.14
[Arabidopsis thaliana]
Length = 1076
Score = 69.7 bits (169), Expect = 2e-11
Identities = 31/67 (46%), Positives = 45/67 (66%)
Frame = -2
Query: 555 NVAMTRARYSLWILGNAXTLVSSDTVWKQVLLDAKKRDCFHTPDKDNQLARVIEDVVFEL 376
NV +TRAR+ LWILGN TL++S +VW+ ++ DAK+R CFH+ +D LA+ I E
Sbjct: 799 NVLLTRARFCLWILGNEATLMNSKSVWRNLIQDAKERGCFHSAGEDESLAQAIASTNIEF 858
Query: 375 QLLEESE 355
+ L S+
Sbjct: 859 RPLNNSK 865
>gb|AAM76346.1|AC074196_4 putative helicase [Oryza sativa (japonica cultivar-group)]
Length = 1361
Score = 62.8 bits (151), Expect = 3e-09
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = -2
Query: 555 NVAMTRARYSLWILGNAXTLVSSDTVWKQVLLDAKKRDCFHTPDKDNQLARVI 397
NVA+TRA+Y LWILGN TL++S+++W +++ D+K+R CF D LA +I
Sbjct: 841 NVALTRAKYCLWILGNGATLLASNSIWAELVHDSKRRGCFFNALDDKNLAEII 893
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,247,600
Number of Sequences: 1393205
Number of extensions: 7990683
Number of successful extensions: 18349
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 17749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18334
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
