Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013465A_C01 KMC013465A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM55297.1| auxin efflux carrier protein [Medicago truncatula] 35 0.51
ref|NP_565261.1| putative auxin transport protein; protein id: A... 33 1.1
dbj|BAB90475.1| putative efflux carrier, pin3 [Oryza sativa (jap... 33 1.1
ref|NP_177250.1| auxin transport protein REH1, putative; protein... 33 1.1
emb|CAC67457.1| efflux carrier, pin2 [Brassica juncea] 33 1.1
>gb|AAM55297.1| auxin efflux carrier protein [Medicago truncatula]
Length = 659
Score = 34.7 bits (78), Expect = 0.51
Identities = 17/46 (36%), Positives = 27/46 (57%)
Frame = -1
Query: 164 IMVMVVYEKL*NSSCYMLLIGFVWNLMA*VWYVVAETIYRKSVVFL 27
I++MV + + N + Y LIG +W+L+A W+V I KS+ L
Sbjct: 502 ILIMVWRKLIRNPNTYSSLIGLIWSLVAFRWHVHMPKIIEKSISIL 547
>ref|NP_565261.1| putative auxin transport protein; protein id: At2g01420.1,
supported by cDNA: gi_7109714 [Arabidopsis thaliana]
gi|7109715|gb|AAF36769.1| auxin transporter splice
variant b [Arabidopsis thaliana]
gi|20197401|gb|AAC67319.2| putative auxin transport
protein [Arabidopsis thaliana]
gi|20197591|gb|AAM15143.1| putative auxin transport
protein [Arabidopsis thaliana]
Length = 612
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (57%)
Frame = -1
Query: 164 IMVMVVYEKL*NSSCYMLLIGFVWNLMA*VWYVVAETIYRKSVVFL 27
I++MV + + N + Y LIG +W L+A W+V I ++S+ L
Sbjct: 455 ILIMVWRKLIRNPNTYSSLIGLIWALVAYRWHVAMPKILQQSISIL 500
>dbj|BAB90475.1| putative efflux carrier, pin3 [Oryza sativa (japonica
cultivar-group)]
Length = 574
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = -1
Query: 164 IMVMVVYEKL*NSSCYMLLIGFVWNLMA*VWYVVAETIYRKSVVFL 27
I++MV + + N + Y L+G W+L+A W+V I KS+ L
Sbjct: 461 ILIMVWRKLIRNPNTYSSLLGLAWSLVAFRWHVSMPAIVEKSISIL 506
>ref|NP_177250.1| auxin transport protein REH1, putative; protein id: At1g70940.1,
supported by cDNA: gi_5817300 [Arabidopsis thaliana]
gi|25365976|pir||G96733 auxin transport protein
[imported] - Arabidopsis thaliana
gi|5817301|gb|AAD52695.1|AF087818_1 auxin transport
protein [Arabidopsis thaliana]
gi|5902405|gb|AAD55507.1|AC008148_17 auxin transport
protein [Arabidopsis thaliana]
gi|22530978|gb|AAM96993.1| putative auxin transport
protein REH1 [Arabidopsis thaliana]
gi|25083625|gb|AAN72096.1| putative auxin transport
protein REH1 [Arabidopsis thaliana]
Length = 640
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (57%)
Frame = -1
Query: 164 IMVMVVYEKL*NSSCYMLLIGFVWNLMA*VWYVVAETIYRKSVVFL 27
I++MV + + N + Y LIG +W L+A W+V I ++S+ L
Sbjct: 483 ILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQSISIL 528
>emb|CAC67457.1| efflux carrier, pin2 [Brassica juncea]
Length = 640
Score = 33.5 bits (75), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (57%)
Frame = -1
Query: 164 IMVMVVYEKL*NSSCYMLLIGFVWNLMA*VWYVVAETIYRKSVVFL 27
I++MV + + N + Y LIG +W L+A W+V I ++S+ L
Sbjct: 483 ILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPKIIQQSISIL 528
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,841,157
Number of Sequences: 1393205
Number of extensions: 8519253
Number of successful extensions: 46082
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 45204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46079
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
