Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013444A_C01 KMC013444A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1JGJ|A Chain A, Crystal Structure Of Sensory Rhodopsin Ii At... 35 0.75
sp|P42196|BACT_NATPH Sensory rhodopsin II (SR-II) gi|1363466|pir... 35 0.97
pdb|1H2S|A Chain A, Molecular Basis Of Transmenbrane Signalling ... 35 0.97
>pdb|1JGJ|A Chain A, Crystal Structure Of Sensory Rhodopsin Ii At 2.4
Angstroms: Insights Into Color Tuning And Transducer
Interaction
Length = 217
Score = 35.0 bits (79), Expect = 0.75
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 420 AIATFKWLYLLLSPKTESCKQQLQATTYLIMYMNTLSMVRWTIKHYLYVIFPHPQALPDP 599
A+A +Y L+ P TES Q+ L + + L++V W I +++++ P AL P
Sbjct: 131 AVAFIGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVVLWAIYPFIWLLGPPGVALLTP 190
>sp|P42196|BACT_NATPH Sensory rhodopsin II (SR-II) gi|1363466|pir||S55300 sensory
rhodopsin II - Natronobacterium pharaonis
gi|15826627|pdb|1H68|A Chain A, Sensory Rhodopsin Ii
gi|20663737|pdb|1GU8|A Chain A, Sensory Rhodopsin Ii
gi|20663738|pdb|1GU8|B Chain B, Sensory Rhodopsin Ii
gi|20663741|pdb|1GUE|A Chain A, Sensory Rhodopsin Ii
gi|510870|emb|CAA84469.1| sensory rhodopsin II
apoprotein [Natronomonas pharaonis]
Length = 239
Score = 34.7 bits (78), Expect = 0.97
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 420 AIATFKWLYLLLSPKTESCKQQLQATTYLIMYMNTLSMVRWTIKHYLYVIFPHPQALPDP 599
A+A +Y L+ P TES Q+ L + + L+++ W I +++++ P AL P
Sbjct: 131 AVAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTP 190
>pdb|1H2S|A Chain A, Molecular Basis Of Transmenbrane Signalling By Sensory
Rhodopsin Ii-Transducer Complex
Length = 225
Score = 34.7 bits (78), Expect = 0.97
Identities = 17/60 (28%), Positives = 31/60 (51%)
Frame = +3
Query: 420 AIATFKWLYLLLSPKTESCKQQLQATTYLIMYMNTLSMVRWTIKHYLYVIFPHPQALPDP 599
A+A +Y L+ P TES Q+ L + + L+++ W I +++++ P AL P
Sbjct: 131 AVAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTP 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,892,398
Number of Sequences: 1393205
Number of extensions: 10505200
Number of successful extensions: 17626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17310
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17623
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
