Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013442A_C01 KMC013442A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG41218.1|AF201285_1 TSC22-related inducible leucine zipper ... 36 0.43
emb|CAB63135.1| hypothetical protein L3238.08 [Leishmania major] 34 1.2
ref|NP_505690.1| Predicted CDS, Na/Ca eXchanger NCX-5 (ncx-5) [C... 34 1.6
gb|EAA42550.1| GLP_165_29948_31483 [Giardia lamblia ATCC 50803] 33 2.1
dbj|BAC03887.1| unnamed protein product [Homo sapiens] 27 2.6
>gb|AAG41218.1|AF201285_1 TSC22-related inducible leucine zipper 1b [Mus musculus]
Length = 1057
Score = 35.8 bits (81), Expect = 0.43
Identities = 29/87 (33%), Positives = 34/87 (38%), Gaps = 4/87 (4%)
Frame = +3
Query: 297 ESSSDHSSLLSRQSSTTPVNLRSPSPTSSSAPSLKQLHRLHPPP*I----GSLHCLRSHH 464
E SS +L + Q + TP S + P L Q H H P G+ H HH
Sbjct: 148 ERSSSEETLNNFQEAETP------GAVSPNQPHLPQPHLPHLPQQNVVINGNAHPHHLHH 201
Query: 465 QHHPCSGIHEIDSDIAEEHQSHARVLG 545
HHP G H H SHA V G
Sbjct: 202 HHHPHHGHH---LHHGHHHSSHAAVAG 225
>emb|CAB63135.1| hypothetical protein L3238.08 [Leishmania major]
Length = 568
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Frame = -1
Query: 491 VNSTTRVVLMMRS--EAVERTDSRRRMKTMELLQAGSGGGGRRRRTQ 357
V + TR V +S +A +++ RM+ +AG+GGGG+RRR Q
Sbjct: 493 VRAATRAVFSAQSLADAARLRETKERMRREADARAGAGGGGKRRRRQ 539
>ref|NP_505690.1| Predicted CDS, Na/Ca eXchanger NCX-5 (ncx-5) [Caenorhabditis
elegans] gi|7509533|pir||T19746 hypothetical protein
Y32F6B.2 - Caenorhabditis elegans
gi|3874763|emb|CAA94912.1| C. elegans NCX-5 protein
(corresponding sequence Y32F6B.2) [Caenorhabditis
elegans] gi|3880764|emb|CAA16315.1| C. elegans NCX-5
protein (corresponding sequence Y32F6B.2)
[Caenorhabditis elegans]
Length = 591
Score = 33.9 bits (76), Expect = 1.6
Identities = 16/54 (29%), Positives = 30/54 (54%)
Frame = +2
Query: 332 PKLYHTSELAFSFSDLLLRSQPEATPSSSSSSVNRFSPLPPISSSAPPV*WNSR 493
P ++ E+ S + L++ + + + SSSSSS R + + P+S+ P + N R
Sbjct: 233 PMIHGGQEVRKSIAQLVIGDEDDTSSSSSSSSSERSNKIKPVSNGVPEIRQNGR 286
>gb|EAA42550.1| GLP_165_29948_31483 [Giardia lamblia ATCC 50803]
Length = 511
Score = 33.5 bits (75), Expect = 2.1
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +3
Query: 339 STTPVNLRSPSPTSSSAPSLKQLHRLHPPP*IGSLHCLRSHHQHHPCSGIHEIDSDIAEE 518
S TP RSPSP S +PS H +P +GS CLR++ P + E D+ E
Sbjct: 265 SITPRVSRSPSPVRSPSPSRLVSHPDYPAL-LGSQRCLRAYLDSEPDRSLVE---DLLET 320
Query: 519 HQSHARVLGL 548
+ V+G+
Sbjct: 321 AVARRSVMGI 330
>dbj|BAC03887.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 27.3 bits (59), Expect(2) = 2.6
Identities = 15/32 (46%), Positives = 21/32 (64%)
Frame = +3
Query: 300 SSSDHSSLLSRQSSTTPVNLRSPSPTSSSAPS 395
S+S SS S SS++P + S S +SSS+PS
Sbjct: 88 STSSPSSSSSSSSSSSPSSSNSSSSSSSSSPS 119
Score = 26.6 bits (57), Expect(2) = 4.4
Identities = 15/32 (46%), Positives = 20/32 (61%)
Frame = +3
Query: 300 SSSDHSSLLSRQSSTTPVNLRSPSPTSSSAPS 395
SSS SS SS++P + S S +SSS+PS
Sbjct: 138 SSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPS 169
Score = 24.6 bits (52), Expect(2) = 4.4
Identities = 13/28 (46%), Positives = 18/28 (63%)
Frame = +2
Query: 389 SQPEATPSSSSSSVNRFSPLPPISSSAP 472
S ++PSSS+SS + S P SSS+P
Sbjct: 174 SSSGSSPSSSNSSPSSSSSSPSSSSSSP 201
Score = 24.6 bits (52), Expect(2) = 2.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 389 SQPEATPSSSSSSVNRFSPLPPISSSAP 472
S P ++ SS SSS + S P SSS+P
Sbjct: 127 SSPSSSSSSPSSSSSSSSSSPSSSSSSP 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,142,697
Number of Sequences: 1393205
Number of extensions: 12532159
Number of successful extensions: 58918
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 49468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57899
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
