Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013387A_C01 KMC013387A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179346.1| hypothetical protein; protein id: At2g17550.1 [... 72 6e-12
dbj|BAA85416.1| similar to Aquifex aeolicus section 65 of 109 of... 49 4e-05
gb|AAM22715.1|AC098693_20 Unknown protein [Oryza sativa (japonic... 49 4e-05
ref|XP_287566.1| hypothetical protein XP_287566 [Mus musculus] 40 0.016
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 39 0.046
>ref|NP_179346.1| hypothetical protein; protein id: At2g17550.1 [Arabidopsis
thaliana] gi|25411799|pir||E84553 hypothetical protein
At2g17550 [imported] - Arabidopsis thaliana
gi|4914376|gb|AAD32912.1| hypothetical protein
[Arabidopsis thaliana]
Length = 765
Score = 71.6 bits (174), Expect = 6e-12
Identities = 38/93 (40%), Positives = 56/93 (59%), Gaps = 2/93 (2%)
Frame = -2
Query: 566 LTVSPFRRKLSNSSMLPPP--RGKELLKLVWNIIGVSVYPPSDITPCSLDSLVAQHLRSI 393
LT S F+ KL +SS+ RGK LL+ W I+ +Y + CSLD ++ +
Sbjct: 668 LTKSGFKNKLLSSSVSESTTIRGKYLLESTWKIMSEYLYSQPERPFCSLDGIIGWDMDRF 727
Query: 392 PWSGLTNDEINVVEREIECLIINDLVEELTKDM 294
PWS L +E+NV+ +E+E +I+ DLVEEL KD+
Sbjct: 728 PWSALIGEEVNVLGKEVEGMIMADLVEELVKDL 760
>dbj|BAA85416.1| similar to Aquifex aeolicus section 65 of 109 of the complete genome;
hypothetical protein. (AE000733) [Oryza sativa (japonica
cultivar-group)] gi|29367471|gb|AAO72591.1| unknown
[Oryza sativa (japonica cultivar-group)]
Length = 1413
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = -2
Query: 512 PRGKELLKLVWNIIGVSVYPPSDI-TPCSLDSLVAQHLRSIPWSGLTNDEINVVEREIEC 336
P GK LL +WN + + PP +P S+D L+ + + PW+G +++ E+E
Sbjct: 1334 PGGKRLLDGLWNTVQAWLAPPPPTDSPNSVDELIGRDMSMSPWNGPFREDVGAAGAEMEA 1393
Query: 335 LIINDLVEELTKDML 291
I+++LV+E D+L
Sbjct: 1394 EILDELVDETLWDVL 1408
>gb|AAM22715.1|AC098693_20 Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 908
Score = 48.9 bits (115), Expect = 4e-05
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = -2
Query: 512 PRGKELLKLVWNIIGVSVYPPSDI-TPCSLDSLVAQHLRSIPWSGLTNDEINVVEREIEC 336
P GK LL +WN + + PP +P S+D L+ + + PW+G +++ E+E
Sbjct: 829 PGGKRLLDGLWNTVQAWLAPPPPTDSPNSVDELIGRDMSMSPWNGPFREDVGAAGAEMEA 888
Query: 335 LIINDLVEELTKDML 291
I+++LV+E D+L
Sbjct: 889 EILDELVDETLWDVL 903
>ref|XP_287566.1| hypothetical protein XP_287566 [Mus musculus]
Length = 115
Score = 40.4 bits (93), Expect = 0.016
Identities = 19/54 (35%), Positives = 30/54 (55%)
Frame = +1
Query: 31 FLLGKKEPNSSSHSYTICITASSMLLYHKHKNPLLYTHTHTHTHIHAVFH*HNY 192
+LLG ++ +H++T T + Y H + ++THTHTHTH H H H +
Sbjct: 54 YLLGISTTHTHTHTHTHTHTYTHTHTY-MHTHTYMHTHTHTHTHTHTHTHTHTH 106
Score = 35.4 bits (80), Expect = 0.51
Identities = 17/46 (36%), Positives = 24/46 (51%), Gaps = 5/46 (10%)
Frame = +1
Query: 76 TICITASSMLLYHKHKNPLL-----YTHTHTHTHIHAVFH*HNYIN 198
T+ T + + K+ LL +THTHTHTH H H H Y++
Sbjct: 37 TLYKTGQGLFQGEREKDYLLGISTTHTHTHTHTHTHTYTHTHTYMH 82
Score = 34.7 bits (78), Expect = 0.86
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +1
Query: 118 HKNPLLYTHTHTHTHIHAVFH*HNYIN 198
H + +THTHT+TH H H H Y++
Sbjct: 62 HTHTHTHTHTHTYTHTHTYMHTHTYMH 88
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 38.9 bits (89), Expect = 0.046
Identities = 17/48 (35%), Positives = 28/48 (57%), Gaps = 2/48 (4%)
Frame = +1
Query: 61 SSHSYTICIT--ASSMLLYHKHKNPLLYTHTHTHTHIHAVFH*HNYIN 198
S+H++ + +T + LL H H + + H H+HTHIH+ H H + N
Sbjct: 61 STHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHTHSHIHSN 108
Score = 37.0 bits (84), Expect = 0.17
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +1
Query: 55 NSSSHSYTICITASSMLLY---HKHKNPLLYTHTHTHTHIHAVF 177
++ +H++T +T S ++ H H +PL +T THTH H H V+
Sbjct: 164 HTPTHTHTHALTHSHTHIHTHMHSHTHPLTHTSTHTHPHTHNVW 207
Score = 36.6 bits (83), Expect = 0.23
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Frame = +1
Query: 55 NSSSHSYTICITASSMLLYHKHKNPLLY--THTHTHTHIHAVFH*HNYIN 198
++ H+YT T + L + H P+ + THT THTH HA+ H H +I+
Sbjct: 134 HAHKHTYTHTSTHTHPLTF-THTYPITHPLTHTPTHTHTHALTHSHTHIH 182
Score = 34.3 bits (77), Expect = 1.1
Identities = 14/49 (28%), Positives = 28/49 (56%), Gaps = 7/49 (14%)
Frame = +1
Query: 55 NSSSHSYTICITASSMLLY-------HKHKNPLLYTHTHTHTHIHAVFH 180
++S+H++ + T + + + H H + L ++HTH HTH+H+ H
Sbjct: 142 HTSTHTHPLTFTHTYPITHPLTHTPTHTHTHALTHSHTHIHTHMHSHTH 190
Score = 34.3 bits (77), Expect = 1.1
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = +1
Query: 67 HSYTICITASSMLLYHKHKNPLLYTHTHTHTHIHAVFH*H 186
HS+T +T S L H PL TH HTH H H H H
Sbjct: 29 HSHTHPLTHSHPL---SHTYPLTLTHIHTHPHTHISTHTH 65
Score = 32.3 bits (72), Expect = 4.3
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 52 PNSSSHSYTICITASSMLLYHKHKNPLLYTHTHTHTHIHAVFH*HNY 192
P +S+H T +T + H H + +T+THT TH H + H Y
Sbjct: 115 PLTSTHIQTSTVTHT-----HSHTHAHKHTYTHTSTHTHPLTFTHTY 156
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,291,594
Number of Sequences: 1393205
Number of extensions: 10677095
Number of successful extensions: 38279
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 25930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31938
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
