Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013380A_C01 KMC013380A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB39306.1| hypothetical protein [Macaca fascicularis] 38 0.074
pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans 34 1.1
ref|NP_229365.1| signal recognition particle protein [Thermotoga... 34 1.1
ref|NP_766422.1| hypothetical protein 4932417K07 [Mus musculus] ... 34 1.4
dbj|BAA24931.1| peroxisome assembly factor-2 [Rattus norvegicus] 33 1.8
>dbj|BAB39306.1| hypothetical protein [Macaca fascicularis]
Length = 672
Score = 38.1 bits (87), Expect = 0.074
Identities = 27/92 (29%), Positives = 41/92 (44%)
Frame = +3
Query: 180 EEGEKKKIRKMRRIT*KKHENNLNQQHFHRCAEEGA*DDEEAPTAGKSTEKSAKSRVGVE 359
E+ KKK + R KK Q + +G+ ++EE S+E+S+ E
Sbjct: 406 EQARKKKEKDKLRQLLKKERLKAKLQRKKKKKRKGSDEEEEGEEESSSSEESSSEEEEEE 465
Query: 360 ETTGEEEEETRG*NLERVNGKMLYEECETAAR 455
ET EEEEE G ++ V + +E AR
Sbjct: 466 ETEEEEEEEEFGPGMQEVIEQHKFEAHRWLAR 497
>pir||T31613 hypothetical protein Y50E8A.i - Caenorhabditis elegans
Length = 836
Score = 34.3 bits (77), Expect = 1.1
Identities = 24/77 (31%), Positives = 36/77 (46%)
Frame = -3
Query: 410 SFQVSTSSFFFLFTCRLFHTYATFGRFFSRFASGRSFFIVLGSFFCTPMKVLLV*IIFML 231
+F + +FFLF LF Y F +FF +F FF+ L FF + + I+F +
Sbjct: 727 NFNFNFYFYFFLFYF-LFFIYLFFFKFFFKF-----FFLFLFIFFIFMFIFIFIFILFFI 780
Query: 230 FLCYPSHFSDFLFFSFF 180
F+ +F F F F
Sbjct: 781 FIFIYFYFILFFFIYLF 797
>ref|NP_229365.1| signal recognition particle protein [Thermotoga maritima]
gi|7440083|pir||F72236 signal recognition particle
protein - Thermotoga maritima (strain MSB8)
gi|4982134|gb|AAD36632.1|AE001802_1 signal recognition
particle protein [Thermotoga maritima]
Length = 433
Score = 34.3 bits (77), Expect = 1.1
Identities = 26/76 (34%), Positives = 39/76 (51%)
Frame = +1
Query: 166 LGVVEKKEKKRKSEK*EG*HRKSMKII*TSSTFIGVQKKEPRTMKKLRPLANLLKNLPKV 345
L ++EK EK+ EK + K +K T F K++ + MKKL PL+++L+ LP
Sbjct: 298 LSLIEKVEKELDQEKMKKSAEKFLKAEFTLEDF----KEQLQEMKKLGPLSSILEMLPGA 353
Query: 346 A*VWKRRQVKRKKKLE 393
V K KK+E
Sbjct: 354 PKVDVEMSEKELKKIE 369
>ref|NP_766422.1| hypothetical protein 4932417K07 [Mus musculus]
gi|26326031|dbj|BAC26759.1| unnamed protein product [Mus
musculus]
Length = 996
Score = 33.9 bits (76), Expect = 1.4
Identities = 22/69 (31%), Positives = 33/69 (46%)
Frame = +3
Query: 180 EEGEKKKIRKMRRIT*KKHENNLNQQHFHRCAEEGA*DDEEAPTAGKSTEKSAKSRVGVE 359
EE KKK + R KK Q + ++G+ D+EE +S+ + + S E
Sbjct: 679 EEARKKKEKDKLRQLLKKERLKAKLQRKKKKKKKGSDDEEEGGEEEESSSEESSSEEEEE 738
Query: 360 ETTGEEEEE 386
E + EEEEE
Sbjct: 739 EESEEEEEE 747
>dbj|BAA24931.1| peroxisome assembly factor-2 [Rattus norvegicus]
Length = 978
Score = 33.5 bits (75), Expect = 1.8
Identities = 21/54 (38%), Positives = 27/54 (49%)
Frame = -1
Query: 496 KTEGLVKLNPAQVYLAAVSHSSYNILPFTLSKFQPLVSSSSSPVVSSTPTRLLA 335
KT G PA +LA +H+S + TLS+ PL S S P S +P L A
Sbjct: 387 KTVGEAPDGPASAFLADTTHTSLYLAGTTLSRVPPLPSGRSPPWDSLSPPGLEA 440
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,232,251
Number of Sequences: 1393205
Number of extensions: 9409783
Number of successful extensions: 34777
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34161
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
