Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013369A_C01 KMC013369A_c01
(474 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61117.1| short chain alcohol dehydrogenase-like [Arabidops... 94 1e-18
ref|NP_196225.1| short chain alcohol dehydrogenase-like; protein... 94 1e-18
ref|NP_180489.1| putative tropinone reductase; protein id: At2g2... 85 4e-16
gb|AAO42159.1| putative tropinone reductase [Arabidopsis thaliana] 85 4e-16
ref|NP_488496.1| tropinone reductase homolog [Nostoc sp. PCC 712... 73 4e-16
>gb|AAM61117.1| short chain alcohol dehydrogenase-like [Arabidopsis thaliana]
Length = 264
Score = 93.6 bits (231), Expect = 1e-18
Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Frame = -3
Query: 469 HVGSGAVYAASKAAINQLTQYLACEWAKDHIRSHSVATWYTKTSLVEPVLSHQELVNEIL 290
H+ SG++Y A+K A+NQLT+ LACEWA D+IR++ VA WY KTSLVE +L +E V ++
Sbjct: 154 HLSSGSIYGATKGALNQLTRNLACEWASDNIRTNCVAPWYIKTSLVETLLEKKEFVEAVV 213
Query: 289 SRTPIKRMAETHD-SVILGHFPLPASCFL 206
SRTP+ R+ E + S ++ LPAS ++
Sbjct: 214 SRTPLGRVGEPEEVSSLVAFLCLPASSYI 242
Score = 37.0 bits (84), Expect = 0.11
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -1
Query: 249 VSSLVTFLCLPAASYITGPV 190
VSSLV FLCLPA+SYITG V
Sbjct: 227 VSSLVAFLCLPASSYITGQV 246
>ref|NP_196225.1| short chain alcohol dehydrogenase-like; protein id: At5g06060.1,
supported by cDNA: 111427. [Arabidopsis thaliana]
gi|8978342|dbj|BAA98195.1| short chain alcohol
dehydrogenase-like [Arabidopsis thaliana]
gi|27754526|gb|AAO22710.1| putative short chain alcohol
dehydrogenase [Arabidopsis thaliana]
gi|28394081|gb|AAO42448.1| putative short chain alcohol
dehydrogenase [Arabidopsis thaliana]
Length = 264
Score = 93.6 bits (231), Expect = 1e-18
Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Frame = -3
Query: 469 HVGSGAVYAASKAAINQLTQYLACEWAKDHIRSHSVATWYTKTSLVEPVLSHQELVNEIL 290
H+ SG++Y A+K A+NQLT+ LACEWA D+IR++ VA WY KTSLVE +L +E V ++
Sbjct: 154 HLSSGSIYGATKGALNQLTRNLACEWASDNIRTNCVAPWYIKTSLVETLLEKKEFVEAVV 213
Query: 289 SRTPIKRMAETHD-SVILGHFPLPASCFL 206
SRTP+ R+ E + S ++ LPAS ++
Sbjct: 214 SRTPLGRVGEPEEVSSLVAFLCLPASSYI 242
Score = 37.0 bits (84), Expect = 0.11
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = -1
Query: 249 VSSLVTFLCLPAASYITGPV 190
VSSLV FLCLPA+SYITG V
Sbjct: 227 VSSLVAFLCLPASSYITGQV 246
>ref|NP_180489.1| putative tropinone reductase; protein id: At2g29260.1 [Arabidopsis
thaliana] gi|25283419|pir||D84694 probable tropinone
reductase [imported] - Arabidopsis thaliana
gi|3980406|gb|AAC95209.1| putative tropinone reductase
[Arabidopsis thaliana]
Length = 322
Score = 84.7 bits (208), Expect = 4e-16
Identities = 49/106 (46%), Positives = 70/106 (65%), Gaps = 2/106 (1%)
Frame = -3
Query: 454 AVYAASKAAINQLTQYLACEWAKDHIRSHSVATWYTKTSLVEPVLSHQELVNEILSRTPI 275
+V +++K AINQLT+ LACEWAKD+IR ++VA WY KTS+VE VLS++E + E+ S TP+
Sbjct: 218 SVQSSTKGAINQLTRSLACEWAKDNIRINAVAPWYIKTSMVEQVLSNKEYLEEVYSVTPL 277
Query: 274 KRMAETHD-SVILGHFPLPASCFLHHWTGYFLLM-GDLLPMDFQPR 143
R+ E + S + LPAS ++ TG L + G + F PR
Sbjct: 278 GRLGEPREVSSAVAFLCLPASSYI---TGQILCVDGGMSINGFFPR 320
>gb|AAO42159.1| putative tropinone reductase [Arabidopsis thaliana]
Length = 312
Score = 84.7 bits (208), Expect = 4e-16
Identities = 49/106 (46%), Positives = 70/106 (65%), Gaps = 2/106 (1%)
Frame = -3
Query: 454 AVYAASKAAINQLTQYLACEWAKDHIRSHSVATWYTKTSLVEPVLSHQELVNEILSRTPI 275
+V +++K AINQLT+ LACEWAKD+IR ++VA WY KTS+VE VLS++E + E+ S TP+
Sbjct: 208 SVQSSTKGAINQLTRSLACEWAKDNIRINAVAPWYIKTSMVEQVLSNKEYLEEVYSVTPL 267
Query: 274 KRMAETHD-SVILGHFPLPASCFLHHWTGYFLLM-GDLLPMDFQPR 143
R+ E + S + LPAS ++ TG L + G + F PR
Sbjct: 268 GRLGEPREVSSAVAFLCLPASSYI---TGQILCVDGGMSINGFFPR 310
>ref|NP_488496.1| tropinone reductase homolog [Nostoc sp. PCC 7120]
gi|25283437|pir||AH2362 hypothetical protein alr4456
[imported] - Nostoc sp. (strain PCC 7120)
gi|17133592|dbj|BAB76155.1| ORF_ID:alr4456~tropinone
reductase homolog [Nostoc sp. PCC 7120]
Length = 267
Score = 73.2 bits (178), Expect(2) = 4e-16
Identities = 35/79 (44%), Positives = 54/79 (68%)
Frame = -3
Query: 466 VGSGAVYAASKAAINQLTQYLACEWAKDHIRSHSVATWYTKTSLVEPVLSHQELVNEILS 287
V +GA Y +KAA+ QLT+ LA EWA D IR +++A W+ +T L EP+L++ E ++ +LS
Sbjct: 164 VRTGAPYGMTKAALVQLTRSLAVEWADDGIRVNAIAPWFIQTPLTEPLLNNPETLSAVLS 223
Query: 286 RTPIKRMAETHDSVILGHF 230
RTP+KR+ + + L F
Sbjct: 224 RTPMKRVGQPEEVASLTAF 242
Score = 32.0 bits (71), Expect(2) = 4e-16
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -1
Query: 249 VSSLVTFLCLPAASYITG 196
V+SL FLC+P ASYITG
Sbjct: 236 VASLTAFLCMPTASYITG 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,195,235
Number of Sequences: 1393205
Number of extensions: 9670780
Number of successful extensions: 26638
Number of sequences better than 10.0: 411
Number of HSP's better than 10.0 without gapping: 25904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26618
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
