Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013337A_C01 KMC013337A_c01
(682 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200023.1| dihydrodipicolinate reductase-like protein; pro... 29 1.6
gb|AAM60980.1| dihydrodipicolinate reductase-like protein [Arabi... 29 1.6
>ref|NP_200023.1| dihydrodipicolinate reductase-like protein; protein id:
At5g52100.1, supported by cDNA: 107440. [Arabidopsis
thaliana] gi|10177745|dbj|BAB11058.1|
dihydrodipicolinate reductase-like protein [Arabidopsis
thaliana]
Length = 298
Score = 29.3 bits (64), Expect(2) = 1.6
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = -1
Query: 682 VAINGAALEFGRAAVEAVT 626
V INGAA E GRAAV AVT
Sbjct: 36 VIINGAAKEIGRAAVVAVT 54
Score = 23.9 bits (50), Expect(2) = 1.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 627 LTKARGVDVAGVVD 586
+TKARG+++AG VD
Sbjct: 53 VTKARGMELAGAVD 66
>gb|AAM60980.1| dihydrodipicolinate reductase-like protein [Arabidopsis thaliana]
Length = 297
Score = 29.3 bits (64), Expect(2) = 1.6
Identities = 15/19 (78%), Positives = 15/19 (78%)
Frame = -1
Query: 682 VAINGAALEFGRAAVEAVT 626
V INGAA E GRAAV AVT
Sbjct: 36 VIINGAAKEIGRAAVVAVT 54
Score = 23.9 bits (50), Expect(2) = 1.6
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -2
Query: 627 LTKARGVDVAGVVD 586
+TKARG+++AG VD
Sbjct: 53 VTKARGMELAGAVD 66
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,887,964
Number of Sequences: 1393205
Number of extensions: 10360329
Number of successful extensions: 19582
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19580
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30270070164
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
