Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013328A_C01 KMC013328A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC29477.1| unnamed protein product [Mus musculus] 38 0.055
ref|NP_569715.1| protocadherin 18; expressed sequence BB095589 [... 38 0.055
ref|NP_061908.1| protocadherin 18 precursor; protocadherin 68-li... 38 0.055
ref|XP_227117.1| similar to protocadherin 18 [Mus musculus] [Rat... 38 0.055
pir||T46413 hypothetical protein DKFZp434B0923.1 - human (fragme... 38 0.055
>dbj|BAC29477.1| unnamed protein product [Mus musculus]
Length = 1134
Score = 38.1 bits (87), Expect = 0.055
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 340 KIQTHNLNYRLLQ--IQHYFSKSSISLHRSSSTITATVNATATTNNHH*SSPSFNTQIEI 167
K T + N R+ + QH+ + S +H+ T+ T+N T +HH SSPS + +E
Sbjct: 728 KKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 787
Query: 166 SQ 161
Q
Sbjct: 788 GQ 789
>ref|NP_569715.1| protocadherin 18; expressed sequence BB095589 [Mus musculus]
gi|17864896|gb|AAL47095.1|AF416735_1 protocadherin 18
precursor [Mus musculus]
Length = 1134
Score = 38.1 bits (87), Expect = 0.055
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 340 KIQTHNLNYRLLQ--IQHYFSKSSISLHRSSSTITATVNATATTNNHH*SSPSFNTQIEI 167
K T + N R+ + QH+ + S +H+ T+ T+N T +HH SSPS + +E
Sbjct: 728 KKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 787
Query: 166 SQ 161
Q
Sbjct: 788 GQ 789
>ref|NP_061908.1| protocadherin 18 precursor; protocadherin 68-like protein [Homo
sapiens]
Length = 1135
Score = 38.1 bits (87), Expect = 0.055
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 340 KIQTHNLNYRLLQ--IQHYFSKSSISLHRSSSTITATVNATATTNNHH*SSPSFNTQIEI 167
K T + N R+ + QH+ + S +H+ T+ T+N T +HH SSPS + +E
Sbjct: 728 KKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 787
Query: 166 SQ 161
Q
Sbjct: 788 GQ 789
>ref|XP_227117.1| similar to protocadherin 18 [Mus musculus] [Rattus norvegicus]
Length = 1111
Score = 38.1 bits (87), Expect = 0.055
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 340 KIQTHNLNYRLLQ--IQHYFSKSSISLHRSSSTITATVNATATTNNHH*SSPSFNTQIEI 167
K T + N R+ + QH+ + S +H+ T+ T+N T +HH SSPS + +E
Sbjct: 721 KKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 780
Query: 166 SQ 161
Q
Sbjct: 781 GQ 782
>pir||T46413 hypothetical protein DKFZp434B0923.1 - human (fragment)
gi|6808080|emb|CAB70755.1| hypothetical protein [Homo
sapiens]
Length = 709
Score = 38.1 bits (87), Expect = 0.055
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Frame = -2
Query: 340 KIQTHNLNYRLLQ--IQHYFSKSSISLHRSSSTITATVNATATTNNHH*SSPSFNTQIEI 167
K T + N R+ + QH+ + S +H+ T+ T+N T +HH SSPS + +E
Sbjct: 302 KKDTRSYNCRVAESTYQHHPKRPSRQIHKGDITLVPTINGTLPIRSHHRSSPSSSPTLER 361
Query: 166 SQ 161
Q
Sbjct: 362 GQ 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,275,701
Number of Sequences: 1393205
Number of extensions: 9708437
Number of successful extensions: 37298
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 33334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37069
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
