Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013290A_C01 KMC013290A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC04906.1| unnamed protein product [Homo sapiens] 37 0.18
ref|NP_811117.1| hypothetical protein [Bacteroides thetaiotaomic... 35 0.54
ref|NP_523788.2| serrano CG12758-PD gi|24655349|ref|NP_725838.1|... 34 0.91
gb|AAM89499.1| predicted protein [Leptosphaeria maculans] 34 0.91
gb|AAM50115.1| GH03582p [Drosophila melanogaster] 34 0.91
>dbj|BAC04906.1| unnamed protein product [Homo sapiens]
Length = 226
Score = 36.6 bits (83), Expect = 0.18
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -3
Query: 463 LTLTY-SSHSHTHVHSTTHPLSLATLSPTQL*SEN*SKPSTHA-THPLAAGHHHT 305
LTLT+ +H HTH+ + THPL++ ++ T L + S THA H H HT
Sbjct: 47 LTLTHIHTHPHTHISTHTHPLTVTHITHTHLLTHIHSHSFTHAHMHSHTHIHSHT 101
Score = 33.5 bits (75), Expect = 1.6
Identities = 23/65 (35%), Positives = 30/65 (45%), Gaps = 4/65 (6%)
Frame = -3
Query: 445 SHSH----THVHSTTHPLSLATLSPTQL*SEN*SKPSTHATHPLAAGHHHTPPAPRLKPN 278
SH+H TH+HS THPL+ S P +H T+PL H HT P + +
Sbjct: 18 SHTHPLTLTHIHSHTHPLTH-------------SHPLSH-TYPLTLTHIHTHPHTHISTH 63
Query: 277 PINLT 263
LT
Sbjct: 64 THPLT 68
Score = 31.2 bits (69), Expect = 7.7
Identities = 20/65 (30%), Positives = 29/65 (43%), Gaps = 3/65 (4%)
Frame = -3
Query: 442 HSHTHVHSTTHPLSLATLSPTQ---L*SEN*SKPSTHATHPLAAGHHHTPPAPRLKPNPI 272
HSHTH+HS TH + + +PT L S + + TH H HT +P+
Sbjct: 92 HSHTHIHSHTHS-HIHSNTPTHTHPLTSTHIQTSTVTHTHSHTHAHKHTYTHTSTHTHPL 150
Query: 271 NLTRS 257
T +
Sbjct: 151 TFTHT 155
>ref|NP_811117.1| hypothetical protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29339515|gb|AAO77311.1| hypothetical protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 857
Score = 35.0 bits (79), Expect = 0.54
Identities = 18/50 (36%), Positives = 28/50 (56%)
Frame = +2
Query: 197 TQSLSSPPSSHHLVVVAALRASSQVYWIWLQARRGWCVVVAGCQWVRRVR 346
T LS+PP S + R+S ++ W+W+ A G ++V G +VRR R
Sbjct: 527 TYVLSAPPVSLDEIRSYGSRSSLEIRWLWIMAGIGVLLLVGGVLFVRRKR 576
>ref|NP_523788.2| serrano CG12758-PD gi|24655349|ref|NP_725838.1| serrano CG12758-PA
gi|24655354|ref|NP_725839.1| serrano CG12758-PB
gi|24655358|ref|NP_725840.1| serrano CG12758-PC
gi|21626953|gb|AAF57617.2| CG12758-PA [Drosophila
melanogaster] gi|21626954|gb|AAM68428.1| CG12758-PB
[Drosophila melanogaster] gi|21626955|gb|AAM68429.1|
CG12758-PC [Drosophila melanogaster]
gi|21626956|gb|AAM68430.1| CG12758-PD [Drosophila
melanogaster]
Length = 778
Score = 34.3 bits (77), Expect = 0.91
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 445 SHSHTHVHSTTHPLSLATLSPTQL*SEN*SKPSTHATHPLAAGHH--HTPPAPRLKPNP 275
SHSH+HVHS +H S + P + + A +AA HH H L P+P
Sbjct: 522 SHSHSHVHSHSHGQSQSQQQPPTPNGNTGNAVANAAASAVAAAHHGSHGSHGSHLHPHP 580
>gb|AAM89499.1| predicted protein [Leptosphaeria maculans]
Length = 142
Score = 34.3 bits (77), Expect = 0.91
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -3
Query: 454 TYSSHSHTHVHSTTHPLSLATLSPTQL*SEN*SKPSTHATHPLAAGHHHTPPAPRLKPNP 275
T +++ H H+ T P SP S PS +HP HHH PPAP P P
Sbjct: 83 TNHNNNPNHNHNPTAPALAPEPSPP-------SPPSADPSHP----HHHPPPAPAPPPPP 131
>gb|AAM50115.1| GH03582p [Drosophila melanogaster]
Length = 319
Score = 34.3 bits (77), Expect = 0.91
Identities = 20/59 (33%), Positives = 27/59 (44%), Gaps = 2/59 (3%)
Frame = -3
Query: 445 SHSHTHVHSTTHPLSLATLSPTQL*SEN*SKPSTHATHPLAAGHH--HTPPAPRLKPNP 275
SHSH+HVHS +H S + P + + A +AA HH H L P+P
Sbjct: 63 SHSHSHVHSHSHGQSQSQQQPPTPNGNTGNAVANAAASAVAAAHHGSHGSHGSHLHPHP 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,819,208
Number of Sequences: 1393205
Number of extensions: 10689923
Number of successful extensions: 42170
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 37517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41413
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
