Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013284A_C01 KMC013284A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189177.1| expressed protein; protein id: At3g25500.1, sup... 141 6e-33
dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa ... 125 3e-28
gb|AAF24496.1|AF213695_1 FH protein NFH1 [Nicotiana tabacum] 124 8e-28
gb|AAF24497.1|AF213696_1 FH protein NFH2 [Nicotiana tabacum] 113 1e-24
ref|NP_201548.1| formin-like protein; protein id: At5g67470.1 [A... 83 3e-15
>ref|NP_189177.1| expressed protein; protein id: At3g25500.1, supported by cDNA:
gi_19423898, supported by cDNA: gi_6503009 [Arabidopsis
thaliana] gi|6503010|gb|AAF14548.1| formin-like protein
AHF1 [Arabidopsis thaliana] gi|9279730|dbj|BAB01320.1|
formin-like protein [Arabidopsis thaliana]
gi|19423899|gb|AAL87275.1| putative formin protein AHF1
[Arabidopsis thaliana] gi|23296692|gb|AAN13148.1|
putative formin protein AHF1 [Arabidopsis thaliana]
Length = 1051
Score = 141 bits (355), Expect = 6e-33
Identities = 67/91 (73%), Positives = 80/91 (87%)
Frame = -3
Query: 561 LKIQAPAHVALSLPKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERT 382
+++QA VALSL KEITEYFHG+ AKEEAHPFRIF+VVRDFL V+DRVCKEVG+INERT
Sbjct: 939 IRVQAQESVALSLVKEITEYFHGNSAKEEAHPFRIFLVVRDFLGVVDRVCKEVGMINERT 998
Query: 381 MVSSAHTFPVPVNQMLPEPLPGLHKRQECNN 289
MVSSAH FPVPVN M+P+PLPGL R++ ++
Sbjct: 999 MVSSAHKFPVPVNPMMPQPLPGLVGRRQSSS 1029
>dbj|BAB86073.1| putative formin-like protein AHF1 [Oryza sativa (japonica
cultivar-group)] gi|22093600|dbj|BAC06896.1| putative
formin-like protein AHF1 [Oryza sativa (japonica
cultivar-group)]
Length = 960
Score = 125 bits (315), Expect = 3e-28
Identities = 60/84 (71%), Positives = 70/84 (82%)
Frame = -3
Query: 561 LKIQAPAHVALSLPKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERT 382
+++QA VALSL KEITEYFHGD AKEEAHPFRIFMVVRDFL+VLD+VCKEVG IN+RT
Sbjct: 858 IRVQAQESVALSLVKEITEYFHGDSAKEEAHPFRIFMVVRDFLSVLDQVCKEVGRINDRT 917
Query: 381 MVSSAHTFPVPVNQMLPEPLPGLH 310
+ SS FPVPVN M+P+ P +H
Sbjct: 918 IASSVRHFPVPVNPMMPQLFPRIH 941
>gb|AAF24496.1|AF213695_1 FH protein NFH1 [Nicotiana tabacum]
Length = 868
Score = 124 bits (311), Expect = 8e-28
Identities = 61/83 (73%), Positives = 70/83 (83%)
Frame = -3
Query: 561 LKIQAPAHVALSLPKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERT 382
+++QA VA+SL KEITEYFHG+ A+EEAHPFRIFMVVRDFL VLDRVCKEVG+INERT
Sbjct: 770 IRLQAVESVAMSLVKEITEYFHGNSAREEAHPFRIFMVVRDFLMVLDRVCKEVGMINERT 829
Query: 381 MVSSAHTFPVPVNQMLPEPLPGL 313
+VSSAH FPVPVN L + GL
Sbjct: 830 IVSSAHKFPVPVNPTLQPAIGGL 852
>gb|AAF24497.1|AF213696_1 FH protein NFH2 [Nicotiana tabacum]
Length = 835
Score = 113 bits (283), Expect = 1e-24
Identities = 56/87 (64%), Positives = 67/87 (76%)
Frame = -3
Query: 561 LKIQAPAHVALSLPKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERT 382
L++QA +A+SL KEITEY HGD A+EEAHPFRIFMVV+DFL +LD VCKEVG INERT
Sbjct: 737 LRLQAQETLAMSLVKEITEYVHGDSAREEAHPFRIFMVVKDFLMILDCVCKEVGTINERT 796
Query: 381 MVSSAHTFPVPVNQMLPEPLPGLHKRQ 301
+VSSA FPVPVN L + G ++
Sbjct: 797 IVSSAQKFPVPVNPNLQPVISGFRAKR 823
>ref|NP_201548.1| formin-like protein; protein id: At5g67470.1 [Arabidopsis thaliana]
gi|9757868|dbj|BAB08455.1| formin-like protein
[Arabidopsis thaliana]
Length = 899
Score = 82.8 bits (203), Expect = 3e-15
Identities = 43/79 (54%), Positives = 53/79 (66%), Gaps = 3/79 (3%)
Frame = -3
Query: 558 KIQAPAHVALSLPKEITEYFHGDLAKEEAHPFRIFMVVRDFLAVLDRVCKEVGIINERTM 379
KI+ ALS+ KE+TEYFHG+ A+EEAHP RIFMVVRDFL VLD VCKEV + E +
Sbjct: 797 KIKGGERKALSMVKEVTEYFHGNAAREEAHPLRIFMVVRDFLGVLDNVCKEVKTMQEMST 856
Query: 378 ---VSSAHTFPVPVNQMLP 331
+SA +F + LP
Sbjct: 857 SMGSASARSFRISATASLP 875
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,267,081
Number of Sequences: 1393205
Number of extensions: 10164328
Number of successful extensions: 25011
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 24098
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24983
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
