Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013264A_C01 KMC013264A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_762068.1| Transcriptional regulator [Vibrio vulnificus CM... 37 0.13
ref|NP_563865.1| expressed protein; protein id: At1g10240.1, sup... 37 0.17
ref|NP_638350.1| phage-related protein [Xanthomonas campestris p... 34 1.1
ref|XP_229954.1| similar to TRAF family member-associated Nf-kap... 34 1.4
ref|NP_665731.1| TRAF family member-associated Nf-kappa B activa... 33 1.8
>ref|NP_762068.1| Transcriptional regulator [Vibrio vulnificus CMCP6]
gi|27358107|gb|AAO07058.1|AE016808_78 Transcriptional
regulator [Vibrio vulnificus CMCP6]
Length = 276
Score = 37.4 bits (85), Expect = 0.13
Identities = 29/104 (27%), Positives = 46/104 (43%), Gaps = 5/104 (4%)
Frame = +2
Query: 254 SDASCPYNGAENCLRFLLRSTPSLALLSFSFPKAIESCGFSIAKP*IISSVSSTSGRINE 433
+D+ CP + F + LA+ SFS I+ F + ++ +SS +G +
Sbjct: 96 ADSFCPILVEKVVSEFRALNNTDLAITSFSTTSTIDIANFDVIFS--LNRLSSENGNSYQ 153
Query: 434 SDG*QYVISFTACADL-----GRVLICDSTIGTCSQATSRRSSV 550
YVIS TAC DL RV+ C+S T Q + + +
Sbjct: 154 LRSSSYVISHTACIDLYECYPFRVVYCNSLSKTLVQELLKENKI 197
>ref|NP_563865.1| expressed protein; protein id: At1g10240.1, supported by cDNA:
gi_15983441 [Arabidopsis thaliana]
gi|4914326|gb|AAD32874.1|AC005489_12 F14N23.12
[Arabidopsis thaliana]
gi|15983442|gb|AAL11589.1|AF424595_1 At1g10240/F14N23_12
[Arabidopsis thaliana] gi|23308171|gb|AAN18055.1|
At1g10240/F14N23_12 [Arabidopsis thaliana]
Length = 680
Score = 37.0 bits (84), Expect = 0.17
Identities = 17/37 (45%), Positives = 28/37 (74%)
Frame = -1
Query: 561 ESIETEERLDVACEQVPMVLSQIKTLPRSAHAVNDIT 451
ES +++ERLD+A EQ ++LS+I+ P S+ A+ DI+
Sbjct: 637 ESAKSKERLDIATEQTSILLSRIREQPVSSLAIRDIS 673
>ref|NP_638350.1| phage-related protein [Xanthomonas campestris pv. campestris str.
ATCC 33913] gi|21114214|gb|AAM42274.1| phage-related
protein [Xanthomonas campestris pv. campestris str. ATCC
33913]
Length = 887
Score = 34.3 bits (77), Expect = 1.1
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -1
Query: 498 QIKTLPRSAHAVNDITYCYPSDSLILPEVEDTDEMIHGFAIENPHDS 358
++ + R+A +VN I CYP ++L E TDE + F I+ PHD+
Sbjct: 352 KLAKIRRAACSVNKIANCYP-EALYFQRQEVTDESWYYFRIDFPHDA 397
>ref|XP_229954.1| similar to TRAF family member-associated Nf-kappa B activator [Mus
musculus] [Rattus norvegicus]
Length = 390
Score = 33.9 bits (76), Expect = 1.4
Identities = 21/83 (25%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Frame = -1
Query: 546 EERLDVACEQVPM---VLSQIKTLPRSAHAVNDITYCYPSDSLILPEVEDTDEMIHGFAI 376
E+R+ EQ+ ++ ++K+ R + D T Y +P +ED+D + +
Sbjct: 226 EQRIREQQEQLSFQQTLIDRLKSQLRLVDSSRDNTCDY------VPLLEDSDRRKNNLTL 279
Query: 375 ENPHDSMALGKLKERRARDGVDL 307
+ PHD + LG L++++++ G L
Sbjct: 280 DEPHDKVKLGTLRDKQSKLGKQL 302
>ref|NP_665731.1| TRAF family member-associated Nf-kappa B activator [Rattus
norvegicus] gi|17974226|emb|CAD19561.1| TANK protein
[Rattus norvegicus]
Length = 414
Score = 33.5 bits (75), Expect = 1.8
Identities = 18/75 (24%), Positives = 41/75 (54%)
Frame = -1
Query: 546 EERLDVACEQVPMVLSQIKTLPRSAHAVNDITYCYPSDSLILPEVEDTDEMIHGFAIENP 367
E++ ++ +Q P + ++K+ R + D T Y +P +ED+D + ++ P
Sbjct: 44 EQQEQLSFQQTP--IDRLKSQLRLVDSSRDNTCDY------VPLLEDSDRRKNNLTLDEP 95
Query: 366 HDSMALGKLKERRAR 322
HD + LG L++++++
Sbjct: 96 HDKVKLGTLRDKQSK 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 455,646,734
Number of Sequences: 1393205
Number of extensions: 9173189
Number of successful extensions: 18819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 18295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18813
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
