Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013218A_C01 KMC013218A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566339.1| putative SCO1 protein; protein id: At3g08950.1,... 150 1e-35
gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thal... 150 1e-35
gb|EAA35347.1| hypothetical protein [Neurospora crassa] 98 8e-20
ref|NP_004580.1| cytochrome oxidase deficient homolog 1 [Homo sa... 90 2e-17
ref|NP_595287.1| putative cytochrome C oxidase assembly protein ... 84 1e-15
>ref|NP_566339.1| putative SCO1 protein; protein id: At3g08950.1, supported by cDNA:
142032., supported by cDNA: gi_17979326, supported by
cDNA: gi_20465762 [Arabidopsis thaliana]
gi|17979327|gb|AAL49889.1| putative SCO1 protein
[Arabidopsis thaliana] gi|20465763|gb|AAM20370.1|
putative SCO1 protein [Arabidopsis thaliana]
gi|21553398|gb|AAM62491.1| putative SCO1 protein
[Arabidopsis thaliana]
Length = 334
Score = 150 bits (379), Expect = 1e-35
Identities = 70/103 (67%), Positives = 81/103 (77%)
Frame = -2
Query: 454 PVSWLSFVLLVLTGAGLVFYYDREKKRHIEDIHNA*KAVKPGPYAGKAAIGGPFHLTNHH 275
PVSW+SF LL TGAGLV+YYD +KKRHIEDI+ AVK GP AGKAAIGGPF L
Sbjct: 124 PVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDD 183
Query: 274 GKHVTVKDFLGKWTVMYFGFSHCPSICPDELQKLADAVDKISK 146
GK VT K+ +GKWT++YFGF+HCP ICPDEL KLA A+DKI +
Sbjct: 184 GKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKE 226
>gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thaliana]
Length = 273
Score = 150 bits (379), Expect = 1e-35
Identities = 70/103 (67%), Positives = 81/103 (77%)
Frame = -2
Query: 454 PVSWLSFVLLVLTGAGLVFYYDREKKRHIEDIHNA*KAVKPGPYAGKAAIGGPFHLTNHH 275
PVSW+SF LL TGAGLV+YYD +KKRHIEDI+ AVK GP AGKAAIGGPF L
Sbjct: 63 PVSWMSFFLLFATGAGLVYYYDTQKKRHIEDINKNSIAVKEGPSAGKAAIGGPFSLIRDD 122
Query: 274 GKHVTVKDFLGKWTVMYFGFSHCPSICPDELQKLADAVDKISK 146
GK VT K+ +GKWT++YFGF+HCP ICPDEL KLA A+DKI +
Sbjct: 123 GKRVTEKNLMGKWTILYFGFTHCPDICPDELIKLAAAIDKIKE 165
>gb|EAA35347.1| hypothetical protein [Neurospora crassa]
Length = 303
Score = 97.8 bits (242), Expect = 8e-20
Identities = 48/102 (47%), Positives = 70/102 (68%), Gaps = 1/102 (0%)
Frame = -2
Query: 454 PVSWLSFVLLVLTGAGLVFYYDREKKR-HIEDIHNA*KAVKPGPYAGKAAIGGPFHLTNH 278
P SW + +L VLTGAGL++Y++ EK+R + I +A K V G+ +GGPF L +
Sbjct: 68 PFSWKAGLLFVLTGAGLLWYFEHEKQRMQRKRIADATKGV------GRPKVGGPFELIDQ 121
Query: 277 HGKHVTVKDFLGKWTVMYFGFSHCPSICPDELQKLADAVDKI 152
+GK VT KD G+++++YFGFSHCP ICP+EL K+A +K+
Sbjct: 122 NGKPVTEKDLKGRYSLVYFGFSHCPDICPEELDKMAAMFEKV 163
>ref|NP_004580.1| cytochrome oxidase deficient homolog 1 [Homo sapiens]
gi|8134663|sp|O75880|SCO1_HUMAN SCO1 protein homolog,
mitochondrial precursor gi|3599966|gb|AAD08641.1| h-sco1
[Homo sapiens] gi|9963787|gb|AAG09693.1|AF183424_1
SCO1/2 protein [Homo sapiens] gi|10834819|gb|AAG23836.1|
cytochrome oxidase deficient in yeast homolog 1 [Homo
sapiens] gi|15930128|gb|AAH15504.1|AAH15504 SCO
(cytochrome oxidase deficient, yeast) homolog 1 [Homo
sapiens]
Length = 301
Score = 89.7 bits (221), Expect = 2e-17
Identities = 41/104 (39%), Positives = 59/104 (56%)
Frame = -2
Query: 454 PVSWLSFVLLVLTGAGLVFYYDREKKRHIEDIHNA*KAVKPGPYAGKAAIGGPFHLTNHH 275
PVSW S + G L+ KK E + + + GK +GGPF LT H
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQR-----HIGKPLLGGPFSLTTHT 146
Query: 274 GKHVTVKDFLGKWTVMYFGFSHCPSICPDELQKLADAVDKISKL 143
G+ T KD+LG+W ++YFGF+HCP +CP+EL+K+ VD+I +
Sbjct: 147 GERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI 190
>ref|NP_595287.1| putative cytochrome C oxidase assembly protein [Schizosaccharomyces
pombe] gi|8928327|sp|O42899|SCOH_SCHPO Hypothetical
SCO1/2-like protein gi|7491320|pir||T39304 hypothetical
protein SPBC119.06 - fission yeast (Schizosaccharomyces
pombe) gi|2959367|emb|CAA17921.1| putative cytochrome c
oxidase assembly protein; similar to S. cerevisiae SCO1
and SCO2 [Schizosaccharomyces pombe]
Length = 263
Score = 84.0 bits (206), Expect = 1e-15
Identities = 40/104 (38%), Positives = 63/104 (60%)
Frame = -2
Query: 451 VSWLSFVLLVLTGAGLVFYYDREKKRHIEDIHNA*KAVKPGPYAGKAAIGGPFHLTNHHG 272
+S + +L T GL Y+ EKK+ +E ++ A G+ +GG F L +HHG
Sbjct: 54 ISIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLAT-----IGRPQLGGAFSLIDHHG 108
Query: 271 KHVTVKDFLGKWTVMYFGFSHCPSICPDELQKLADAVDKISKLL 140
VT DF GK++++YFGF+ CP ICPDEL K++ A+D ++ ++
Sbjct: 109 NRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVV 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,651,693
Number of Sequences: 1393205
Number of extensions: 10246547
Number of successful extensions: 28784
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 27960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28777
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
