Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013215A_C01 KMC013215A_c01
(495 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176909.1| hypothetical protein; protein id: At1g67420.1 [... 88 3e-22
pir||T02164 hypothetical protein T1F15.12 - Arabidopsis thaliana... 88 3e-22
pir||T12621 Dc3 promoter-binding factor-1 - common sunflower gi|... 35 0.60
gb|EAA30833.1| predicted protein [Neurospora crassa] 31 8.6
>ref|NP_176909.1| hypothetical protein; protein id: At1g67420.1 [Arabidopsis thaliana]
Length = 876
Score = 88.2 bits (217), Expect(2) = 3e-22
Identities = 40/68 (58%), Positives = 48/68 (69%)
Frame = -2
Query: 419 PPSYICRFSGPRDRNWTFWLEANSSEALRVDLPVLDPKLVDPAKRLKDLFPNWVDVLAYS 240
PPSYI R SG D W FWLEA+S E +RVD+ VLD +L + LK LFP W DV+AY+
Sbjct: 809 PPSYILRLSGNSDEKWNFWLEASSEEEVRVDVAVLDQRLDEETIHLKGLFPKWSDVIAYT 868
Query: 239 SFMSTYTF 216
SF+STY F
Sbjct: 869 SFLSTYLF 876
Score = 37.7 bits (86), Expect(2) = 3e-22
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = -1
Query: 495 NITGPLSRWSFPDNVLPGTETYGGGPP 415
NITGPLS WSF D P E GGPP
Sbjct: 784 NITGPLSGWSFADGKPPAPELPPGGPP 810
>pir||T02164 hypothetical protein T1F15.12 - Arabidopsis thaliana
gi|3176671|gb|AAC18795.1|AAC18795 Contains similarity to
hypothetical gene B0495.7 gb|687822 from C. elegans
cosmid gb|U21317. [Arabidopsis thaliana]
Length = 840
Score = 88.2 bits (217), Expect(2) = 3e-22
Identities = 40/68 (58%), Positives = 48/68 (69%)
Frame = -2
Query: 419 PPSYICRFSGPRDRNWTFWLEANSSEALRVDLPVLDPKLVDPAKRLKDLFPNWVDVLAYS 240
PPSYI R SG D W FWLEA+S E +RVD+ VLD +L + LK LFP W DV+AY+
Sbjct: 773 PPSYILRLSGNSDEKWNFWLEASSEEEVRVDVAVLDQRLDEETIHLKGLFPKWSDVIAYT 832
Query: 239 SFMSTYTF 216
SF+STY F
Sbjct: 833 SFLSTYLF 840
Score = 37.7 bits (86), Expect(2) = 3e-22
Identities = 17/27 (62%), Positives = 17/27 (62%)
Frame = -1
Query: 495 NITGPLSRWSFPDNVLPGTETYGGGPP 415
NITGPLS WSF D P E GGPP
Sbjct: 748 NITGPLSGWSFADGKPPAPELPPGGPP 774
>pir||T12621 Dc3 promoter-binding factor-1 - common sunflower
gi|2228771|gb|AAC49759.1| Dc3 promoter-binding factor-1
[Helianthus annuus]
Length = 378
Score = 34.7 bits (78), Expect = 0.60
Identities = 19/53 (35%), Positives = 25/53 (46%)
Frame = +2
Query: 269 GKDPSISWLDQPTLGLKLGDPLSKLQSY*PLTRRSNSYHGVR*TGIYMMGGPP 427
G PS + + +P LGL G S + Y PL R + Y G + G Y PP
Sbjct: 172 GPPPSSAHMVRPMLGLSTGGGASVIPPYSPLIRETPGYPGGKRAGNYQQQPPP 224
>gb|EAA30833.1| predicted protein [Neurospora crassa]
Length = 451
Score = 30.8 bits (68), Expect = 8.6
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 389 PRDRNWTFWLEANSSEALRVDLPVLDPKLVDPA-KRLKDLFPNWVDVLAYSSFMSTYTF 216
P+ + W + A+ DLPVLDP+L A K K+ P+ ++ SF S +T+
Sbjct: 211 PKKQRQPVWEDLPLDAAIPTDLPVLDPELDGAADKAAKNYIPS-----SFPSFPSVHTY 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,541,197
Number of Sequences: 1393205
Number of extensions: 9416961
Number of successful extensions: 26608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 26155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26608
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
