Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013213A_C01 KMC013213A_c01
(561 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF70824.1|AF154423_1 putative beta-galactosidase [Lycopersic... 123 2e-27
emb|CAC44501.1| beta-galactosidase [Fragaria x ananassa] 116 2e-25
emb|CAB64744.1| putative beta-galactosidase [Arabidopsis thaliana] 103 1e-21
pir||C84685 probable beta-galactosidase [imported] - Arabidopsis... 103 1e-21
ref|NP_180414.2| glycosyl hydrolase family 35 (beta-galactosidas... 103 1e-21
>gb|AAF70824.1|AF154423_1 putative beta-galactosidase [Lycopersicon esculentum]
Length = 852
Score = 123 bits (308), Expect = 2e-27
Identities = 57/72 (79%), Positives = 64/72 (88%)
Frame = -3
Query: 559 NQVISSIKFASYGTPAGTCGNFYHGRCSSHKALSLVQKACIGSSSCSVGVSIDTFGDPCT 380
NQVISSIKFAS+GTP GTCG+F HGRCSS ALS+V+KACIGS SCS+GVSI+ FGDPC
Sbjct: 780 NQVISSIKFASFGTPQGTCGSFIHGRCSSSNALSIVKKACIGSKSCSLGVSINAFGDPCK 839
Query: 379 GVTKSLAVEATC 344
GV KSLAVEA+C
Sbjct: 840 GVAKSLAVEASC 851
>emb|CAC44501.1| beta-galactosidase [Fragaria x ananassa]
Length = 840
Score = 116 bits (290), Expect = 2e-25
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = -3
Query: 559 NQVISSIKFASYGTPAGTCGNFYHGRCSSHKALSLVQKACIGSSSCSVGVSIDTFGDPCT 380
NQVISSIKFASYG P+GTCG+F HG C S +ALS+VQKAC+GS SCS+ VS TFGDPC
Sbjct: 768 NQVISSIKFASYGRPSGTCGSFSHGSCRSSRALSIVQKACVGSKSCSIEVSTHTFGDPCK 827
Query: 379 GVTKSLAVEATC 344
G+ KSLAVEA+C
Sbjct: 828 GLAKSLAVEASC 839
>emb|CAB64744.1| putative beta-galactosidase [Arabidopsis thaliana]
Length = 852
Score = 103 bits (258), Expect = 1e-21
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = -3
Query: 556 QVISSIKFASYGTPAGTCGNFYHGRCSSHKALSLVQKACIGSSSCSVGVSIDTFGDPCTG 377
QVI SIKFAS+GTP GTCG+F G C+S ++LSLVQKACIG SC+V VS FG+PC G
Sbjct: 781 QVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVFGEPCRG 840
Query: 376 VTKSLAVEATCA 341
V KSLAVEA+C+
Sbjct: 841 VVKSLAVEASCS 852
>pir||C84685 probable beta-galactosidase [imported] - Arabidopsis thaliana
gi|4510395|gb|AAD21482.1| putative beta-galactosidase
[Arabidopsis thaliana]
Length = 839
Score = 103 bits (258), Expect = 1e-21
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = -3
Query: 556 QVISSIKFASYGTPAGTCGNFYHGRCSSHKALSLVQKACIGSSSCSVGVSIDTFGDPCTG 377
QVI SIKFAS+GTP GTCG+F G C+S ++LSLVQKACIG SC+V VS FG+PC G
Sbjct: 768 QVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVFGEPCRG 827
Query: 376 VTKSLAVEATCA 341
V KSLAVEA+C+
Sbjct: 828 VVKSLAVEASCS 839
>ref|NP_180414.2| glycosyl hydrolase family 35 (beta-galactosidase); protein id:
At2g28470.1 [Arabidopsis thaliana]
Length = 846
Score = 103 bits (258), Expect = 1e-21
Identities = 49/72 (68%), Positives = 58/72 (80%)
Frame = -3
Query: 556 QVISSIKFASYGTPAGTCGNFYHGRCSSHKALSLVQKACIGSSSCSVGVSIDTFGDPCTG 377
QVI SIKFAS+GTP GTCG+F G C+S ++LSLVQKACIG SC+V VS FG+PC G
Sbjct: 775 QVIFSIKFASFGTPKGTCGSFTQGHCNSSRSLSLVQKACIGLRSCNVEVSTRVFGEPCRG 834
Query: 376 VTKSLAVEATCA 341
V KSLAVEA+C+
Sbjct: 835 VVKSLAVEASCS 846
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,351,785
Number of Sequences: 1393205
Number of extensions: 8993349
Number of successful extensions: 23530
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 22768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23486
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
