Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013190A_C01 KMC013190A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA29103.1| K2 42 0.006
dbj|BAC22734.1| serine-rich protein [Entamoeba histolytica] gi|2... 42 0.008
dbj|BAC22741.1| serine-rich protein [Entamoeba histolytica] 42 0.008
gb|AAF27636.1|AF216960_2 Sec12 [Pichia pastoris] 41 0.011
dbj|BAC22738.1| serine-rich protein [Entamoeba histolytica] 41 0.014
>gb|AAA29103.1| K2
Length = 238
Score = 42.0 bits (97), Expect = 0.006
Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Frame = +2
Query: 146 ATLSKNCDTLIESGNSLMEKLKSSANYDPGASS-DEPGSFPIFKLSETQHED-----EAG 307
A+ + D +E+ +S +K ++S++ P ASS D+P + P S+ E EA
Sbjct: 75 ASSNDKSDDKVEASSS--DKPEASSSDKPEASSSDKPDNKPEASSSDKPEESSSDKPEAS 132
Query: 308 NVSKQDRASVKAPSNSGTSSSSSKPVNKWMAFDK-KPDDVDDATTKGPPSAKNMLKDSEE 484
+ K + +S P N SSS KP NK A KPD+ +A++ P K S++
Sbjct: 133 SSDKPEASSSDKPDNKPEESSSDKPDNKPEASSSDKPDNKPEASSSDKPDNKPEASSSDK 192
Score = 34.3 bits (77), Expect = 1.3
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 1/93 (1%)
Frame = +2
Query: 212 SSANYDPGASSDEPGSFPIFKLSETQHEDEAGNVSKQDRASVKAPSNSGTSSSSSKPVNK 391
SS++ +SSD+P + P E D+ N K + +S P N +SSS KP NK
Sbjct: 132 SSSDKPEASSSDKPDNKP-----EESSSDKPDN--KPEASSSDKPDNKPEASSSDKPDNK 184
Query: 392 WMAFDK-KPDDVDDATTKGPPSAKNMLKDSEEA 487
A KPD+ +A+ SA N +SE +
Sbjct: 185 PEASSSDKPDNKPEAS-----SATNSNDNSESS 212
>dbj|BAC22734.1| serine-rich protein [Entamoeba histolytica]
gi|24475482|dbj|BAC22736.1| serine-rich protein
[Entamoeba histolytica]
Length = 125
Score = 41.6 bits (96), Expect = 0.008
Identities = 32/96 (33%), Positives = 48/96 (49%), Gaps = 1/96 (1%)
Frame = +2
Query: 200 EKLKSSANYDPGASSDEPGSFPIFKLSETQHEDEAGNVSKQDRASVKAPSNSGTSSSSSK 379
EK SS N + +SSD+P + P S+ + EA + K + +S P N +SSS K
Sbjct: 1 EKASSSDNSE-SSSSDKPDNKPEASSSD---KPEASSSDKPEASSSDKPDNKPEASSSDK 56
Query: 380 PVNKWMAFDK-KPDDVDDATTKGPPSAKNMLKDSEE 484
P NK A KPD+ +A++ P K S++
Sbjct: 57 PDNKPEASSSDKPDNKPEASSSDKPDNKPEASSSDK 92
>dbj|BAC22741.1| serine-rich protein [Entamoeba histolytica]
Length = 113
Score = 41.6 bits (96), Expect = 0.008
Identities = 32/96 (33%), Positives = 48/96 (49%), Gaps = 1/96 (1%)
Frame = +2
Query: 200 EKLKSSANYDPGASSDEPGSFPIFKLSETQHEDEAGNVSKQDRASVKAPSNSGTSSSSSK 379
EK SS N + +SSD+P + P S+ + EA + K + +S P N +SSS K
Sbjct: 1 EKASSSDNSE-SSSSDKPDNKPEASSSD---KPEASSSDKPEASSSDKPDNKPEASSSDK 56
Query: 380 PVNKWMAFDK-KPDDVDDATTKGPPSAKNMLKDSEE 484
P NK A KPD+ +A++ P K S++
Sbjct: 57 PDNKPEASSSDKPDNKPEASSSDKPDNKPEASSSDK 92
>gb|AAF27636.1|AF216960_2 Sec12 [Pichia pastoris]
Length = 1038
Score = 41.2 bits (95), Expect = 0.011
Identities = 34/120 (28%), Positives = 57/120 (47%)
Frame = +2
Query: 119 STFQSSSLNATLSKNCDTLIESGNSLMEKLKSSANYDPGASSDEPGSFPIFKLSETQHED 298
+T S+S+ T+ + T E ++ KSS + DP S+D GSF + ++ETQ
Sbjct: 429 TTTTSNSVRRTIPEGYSTAKEFQPDKIKLYKSSLDSDP--SADSTGSFTV-SITETQSSS 485
Query: 299 EAGNVSKQDRASVKAPSNSGTSSSSSKPVNKWMAFDKKPDDVDDATTKGPPSAKNMLKDS 478
SK+ + K S++ T SS+ V + + P VD + + P A + +DS
Sbjct: 486 IKPQKSKKTKKLKKKTSSTATPGSSTALV-ETLIVSTSPQSVDTSLSVTSPVASSTAQDS 544
>dbj|BAC22738.1| serine-rich protein [Entamoeba histolytica]
Length = 121
Score = 40.8 bits (94), Expect = 0.014
Identities = 32/101 (31%), Positives = 49/101 (47%), Gaps = 6/101 (5%)
Frame = +2
Query: 200 EKLKSSANYDPGASSDEPGSFPIFKLSE-----TQHEDEAGNVSKQDRASVKAPSNSGTS 364
EK SS N + +SSD+P + P S+ + + EA + K + +S P N +
Sbjct: 1 EKASSSDNSE-SSSSDKPDNKPEASSSDKPEASSSDKPEASSSDKPEASSSDKPDNKPEA 59
Query: 365 SSSSKPVNKWMAFDK-KPDDVDDATTKGPPSAKNMLKDSEE 484
SSS KP NK A KPD+ +A++ P K S++
Sbjct: 60 SSSDKPDNKPEASSSDKPDNKPEASSSDKPDNKPEASSSDK 100
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 482,811,452
Number of Sequences: 1393205
Number of extensions: 9684737
Number of successful extensions: 31884
Number of sequences better than 10.0: 127
Number of HSP's better than 10.0 without gapping: 29976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31502
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
