Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013177A_C01 KMC013177A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_404564.1| putative virulence determinant [Yersinia pestis... 32 1.4
ref|NP_611091.1| CG8434-PA [Drosophila melanogaster] gi|7302983|... 30 7.2
gb|AAL40397.1|AF220295_2 RNA polymerase 1b [bovine coronavirus] 30 7.2
gb|AAL57305.1| replicase [bovine coronavirus] 30 7.2
gb|AAK83365.1| replicase [bovine coronavirus] 30 7.2
>ref|NP_404564.1| putative virulence determinant [Yersinia pestis]
gi|22127209|ref|NP_670632.1| hypothetical [Yersinia
pestis KIM] gi|25509974|pir||AC0116 probable virulence
determinant YPO0947 [imported] - Yersinia pestis (strain
CO92) gi|15979017|emb|CAC89790.1| putative virulence
determinant [Yersinia pestis CO92]
gi|21960276|gb|AAM86883.1|AE013934_6 hypothetical
[Yersinia pestis KIM]
Length = 3110
Score = 32.3 bits (72), Expect = 1.4
Identities = 24/83 (28%), Positives = 38/83 (44%)
Frame = +1
Query: 37 VSDNLNKDL*FNTCAGRLVIHKINNIIKTQQCNSYVLIRLT*ATPYCTMIFFNNQYPHSN 216
VS+N N D+ + + HK+N I + N VLI + + T I Y +N
Sbjct: 2320 VSENNNTDMQISNI---FLEHKLNQIKSIELDNIDVLININNDNGFMTQIRLVGVYNINN 2376
Query: 217 NSHKTLLNPY*HTIDGILVSELY 285
N + +LN T+DG + L+
Sbjct: 2377 NQKQQVLNFTIQTVDGFTMVPLW 2399
>ref|NP_611091.1| CG8434-PA [Drosophila melanogaster] gi|7302983|gb|AAF58053.1|
CG8434-PA [Drosophila melanogaster]
Length = 1173
Score = 30.0 bits (66), Expect = 7.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -3
Query: 228 LVGVITVWILIVKKNHCTVWCCLCQSYQNIAVTL 127
LVG+ITV ++ V + C +WC L + + ++L
Sbjct: 959 LVGIITVTVICVVVDCCIIWCTLRYQKKKLRMSL 992
>gb|AAL40397.1|AF220295_2 RNA polymerase 1b [bovine coronavirus]
Length = 2685
Score = 30.0 bits (66), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = +3
Query: 279 ALHETPLTKDCIPKPXMSSIKCSFGIEQS*SKNYPGY 389
AL T LT D +P+ + ++CS + + SK+Y GY
Sbjct: 1506 ALQFTTLTVDKVPQAVETRVQCSTNLFKDCSKSYSGY 1542
>gb|AAL57305.1| replicase [bovine coronavirus]
Length = 7094
Score = 30.0 bits (66), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = +3
Query: 279 ALHETPLTKDCIPKPXMSSIKCSFGIEQS*SKNYPGY 389
AL T LT D +P+ + ++CS + + SK+Y GY
Sbjct: 5880 ALQFTTLTLDKVPQAVETRVQCSTNLFKDCSKSYSGY 5916
>gb|AAK83365.1| replicase [bovine coronavirus]
Length = 7094
Score = 30.0 bits (66), Expect = 7.2
Identities = 14/37 (37%), Positives = 22/37 (58%)
Frame = +3
Query: 279 ALHETPLTKDCIPKPXMSSIKCSFGIEQS*SKNYPGY 389
AL T LT D +P+ + ++CS + + SK+Y GY
Sbjct: 5880 ALQFTTLTLDKVPQAVETRVQCSTNLFKDCSKSYSGY 5916
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,881,718
Number of Sequences: 1393205
Number of extensions: 6163842
Number of successful extensions: 10626
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 10508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10626
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
