Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013170A_C01 KMC013170A_c01
(427 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64730.1| putative membrane protein [Arabidopsis thaliana] 47 5e-05
ref|NP_568531.1| Expressed protein; protein id: At5g35735.1, sup... 47 5e-05
ref|NP_566763.1| expressed protein; protein id: At3g25290.1, sup... 45 2e-04
emb|CAC37356.1| putative membrane protein [Solanum tuberosum] 44 6e-04
gb|AAN59773.1| Putative membrane protein [Oryza sativa (japonica... 43 0.001
>gb|AAM64730.1| putative membrane protein [Arabidopsis thaliana]
Length = 404
Score = 47.0 bits (110), Expect = 5e-05
Identities = 19/35 (54%), Positives = 28/35 (79%)
Frame = -3
Query: 425 PDEKYRAIYLDVLLILGALVLVLEVLTWIVVLKRK 321
P++K+R Y+ +L+ LGA VL+LE LTW +VL+RK
Sbjct: 338 PEDKWRWAYIGILIFLGACVLILEPLTWFIVLRRK 372
>ref|NP_568531.1| Expressed protein; protein id: At5g35735.1, supported by cDNA:
32450., supported by cDNA: gi_13937201 [Arabidopsis
thaliana] gi|9758647|dbj|BAB09271.1|
gene_id:MXH1.11~pir||T10200~similar to unknown protein
[Arabidopsis thaliana]
gi|13937202|gb|AAK50094.1|AF372955_1 At1g36580/F28J9_6
[Arabidopsis thaliana] gi|25090111|gb|AAN72231.1|
At1g36580/F28J9_6 [Arabidopsis thaliana]
Length = 404
Score = 47.0 bits (110), Expect = 5e-05
Identities = 19/35 (54%), Positives = 28/35 (79%)
Frame = -3
Query: 425 PDEKYRAIYLDVLLILGALVLVLEVLTWIVVLKRK 321
P++K+R Y+ +L+ LGA VL+LE LTW +VL+RK
Sbjct: 338 PEDKWRWAYIGILIFLGACVLILEPLTWFIVLRRK 372
>ref|NP_566763.1| expressed protein; protein id: At3g25290.1, supported by cDNA:
gi_16323199 [Arabidopsis thaliana]
gi|9294186|dbj|BAB02088.1|
emb|CAB45497.1~gene_id:MJL12.25~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|16323200|gb|AAL15334.1| AT3g25290/MJL12_25
[Arabidopsis thaliana] gi|25090093|gb|AAN72226.1|
At3g25290/MJL12_25 [Arabidopsis thaliana]
Length = 393
Score = 45.1 bits (105), Expect = 2e-04
Identities = 17/35 (48%), Positives = 26/35 (73%)
Frame = -3
Query: 425 PDEKYRAIYLDVLLILGALVLVLEVLTWIVVLKRK 321
P + Y+ Y+ V+ +LG + L+LE +TW+VVLKRK
Sbjct: 349 PQDTYKTAYIAVIAVLGGIALLLEAITWVVVLKRK 383
>emb|CAC37356.1| putative membrane protein [Solanum tuberosum]
Length = 402
Score = 43.5 bits (101), Expect = 6e-04
Identities = 19/49 (38%), Positives = 32/49 (64%), Gaps = 1/49 (2%)
Frame = -3
Query: 419 EKYRAIYLDVLLILGALVLVLEVLTWIVVLKRKYCSKSNTY-DGYNNNG 276
+ ++ Y+ V++ LGA+ ++LE +TW +V+KRK S S+ Y G NG
Sbjct: 344 KNWKKAYIGVIIFLGAIAVLLEAITWFIVIKRKKTSVSDKYPHGNGTNG 392
>gb|AAN59773.1| Putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 384
Score = 42.7 bits (99), Expect = 0.001
Identities = 19/53 (35%), Positives = 33/53 (61%), Gaps = 1/53 (1%)
Frame = -3
Query: 425 PDEKYRAIYLDVLLILGALVLVLEVLTWIVVLKRKYCSKSNT-YDGYNNNGQS 270
P ++ Y+ +L L + L+LE +TW++VL+RK KS++ Y N NG++
Sbjct: 332 PASGWKRSYIAILATLAGVALLLEAITWVIVLRRKKSDKSSSPYGATNGNGRA 384
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 357,229,953
Number of Sequences: 1393205
Number of extensions: 7099160
Number of successful extensions: 16268
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 15851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16263
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
