Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013117A_C02 KMC013117A_c02
(505 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174350.2| UDP-galactose 4-epimerase-like protein; protein... 147 9e-35
gb|AAN60309.1| unknown [Arabidopsis thaliana] 147 9e-35
ref|NP_181031.2| putative UDP-galactose-4-epimerase; protein id:... 145 2e-34
pir||T00467 probable UDPglucose 4-epimerase (EC 5.1.3.2) [import... 145 2e-34
dbj|BAC24804.1| UDP-galactose 4-epimerase-like protein [Oryza sa... 144 7e-34
>ref|NP_174350.2| UDP-galactose 4-epimerase-like protein; protein id: At1g30620.1,
supported by cDNA: gi_13272474, supported by cDNA:
gi_18086328 [Arabidopsis thaliana]
gi|25292360|pir||E86431 T5I8.7 protein - Arabidopsis
thaliana gi|4587518|gb|AAD25749.1|AC007060_7 Strong
similarity to F19I3.8 gi|3033381 putative
UDP-galactose-4-epimerase from Arabidopsis thaliana BAC
gb|AC004238 and is a member of PF|01370 the NAD
dependent epimerase/dehydratase family. EST gb|AA597338
comes from this gene
gi|13272475|gb|AAK17176.1|AF325108_1 unknown protein
[Arabidopsis thaliana] gi|18086329|gb|AAL57628.1|
At1g30620/T5I8_7 [Arabidopsis thaliana]
gi|27363222|gb|AAO11530.1| At1g30620/T5I8_7 [Arabidopsis
thaliana] gi|28395529|gb|AAO39213.1| UDP-D-xylose
4-epimerase [Arabidopsis thaliana]
Length = 419
Score = 147 bits (370), Expect = 9e-35
Identities = 67/90 (74%), Positives = 80/90 (88%)
Frame = -2
Query: 501 KVGIYNVGTGKGSSVKEFVEACQKATGVDLKVEFLPRRPGDYAEVYSDPEKIQRELNWTA 322
KVGIYNVGTGKGSSVKEFVEAC+KATGV++K+++LPRR GDYAEVYSDP KI++ELNWTA
Sbjct: 327 KVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKELNWTA 386
Query: 321 KHLVLQESLGIAWRWQKSPRDGYGVSNAVV 232
KH L+ESL AWRWQK R+GYG++ + V
Sbjct: 387 KHTNLKESLETAWRWQKLHRNGYGLTTSSV 416
>gb|AAN60309.1| unknown [Arabidopsis thaliana]
Length = 419
Score = 147 bits (370), Expect = 9e-35
Identities = 67/90 (74%), Positives = 80/90 (88%)
Frame = -2
Query: 501 KVGIYNVGTGKGSSVKEFVEACQKATGVDLKVEFLPRRPGDYAEVYSDPEKIQRELNWTA 322
KVGIYNVGTGKGSSVKEFVEAC+KATGV++K+++LPRR GDYAEVYSDP KI++ELNWTA
Sbjct: 327 KVGIYNVGTGKGSSVKEFVEACKKATGVEIKIDYLPRRAGDYAEVYSDPSKIRKELNWTA 386
Query: 321 KHLVLQESLGIAWRWQKSPRDGYGVSNAVV 232
KH L+ESL AWRWQK R+GYG++ + V
Sbjct: 387 KHTNLKESLETAWRWQKLHRNGYGLTTSSV 416
>ref|NP_181031.2| putative UDP-galactose-4-epimerase; protein id: At2g34850.1,
supported by cDNA: gi_17979271, supported by cDNA:
gi_20147162 [Arabidopsis thaliana]
gi|17979272|gb|AAL49952.1| At2g34850/F19I3.8
[Arabidopsis thaliana] gi|20147163|gb|AAM10298.1|
At2g34850/F19I3.8 [Arabidopsis thaliana]
Length = 236
Score = 145 bits (367), Expect = 2e-34
Identities = 69/89 (77%), Positives = 77/89 (85%)
Frame = -2
Query: 501 KVGIYNVGTGKGSSVKEFVEACQKATGVDLKVEFLPRRPGDYAEVYSDPEKIQRELNWTA 322
KVGI+NVGTGKGSSVKEFVEAC+KATGVD+KV++L RR GDYAEVYSDP KI+ ELNWTA
Sbjct: 145 KVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEELNWTA 204
Query: 321 KHLVLQESLGIAWRWQKSPRDGYGVSNAV 235
KH LQESL +AWRWQK R GYG S+ V
Sbjct: 205 KHTNLQESLKMAWRWQKLHRSGYGSSSLV 233
>pir||T00467 probable UDPglucose 4-epimerase (EC 5.1.3.2) [imported] -
Arabidopsis thaliana gi|3033381|gb|AAC12825.1| putative
UDP-galactose-4-epimerase [Arabidopsis thaliana]
Length = 375
Score = 145 bits (367), Expect = 2e-34
Identities = 69/89 (77%), Positives = 77/89 (85%)
Frame = -2
Query: 501 KVGIYNVGTGKGSSVKEFVEACQKATGVDLKVEFLPRRPGDYAEVYSDPEKIQRELNWTA 322
KVGI+NVGTGKGSSVKEFVEAC+KATGVD+KV++L RR GDYAEVYSDP KI+ ELNWTA
Sbjct: 284 KVGIFNVGTGKGSSVKEFVEACKKATGVDIKVDYLERRAGDYAEVYSDPRKIKEELNWTA 343
Query: 321 KHLVLQESLGIAWRWQKSPRDGYGVSNAV 235
KH LQESL +AWRWQK R GYG S+ V
Sbjct: 344 KHTNLQESLKMAWRWQKLHRSGYGSSSLV 372
>dbj|BAC24804.1| UDP-galactose 4-epimerase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 421
Score = 144 bits (362), Expect = 7e-34
Identities = 67/90 (74%), Positives = 74/90 (81%)
Frame = -2
Query: 501 KVGIYNVGTGKGSSVKEFVEACQKATGVDLKVEFLPRRPGDYAEVYSDPEKIQRELNWTA 322
KVGIYNVGTGKG SVKEFVEAC+KATGVD+KV++ PRRPGDYAEVYSDP KI ELNWTA
Sbjct: 331 KVGIYNVGTGKGRSVKEFVEACKKATGVDIKVDYFPRRPGDYAEVYSDPAKINSELNWTA 390
Query: 321 KHLVLQESLGIAWRWQKSPRDGYGVSNAVV 232
+H L ESL +AW WQK R GYG A+V
Sbjct: 391 QHTDLLESLRVAWTWQKKHRSGYGPPQAMV 420
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,512,963
Number of Sequences: 1393205
Number of extensions: 9678389
Number of successful extensions: 24241
Number of sequences better than 10.0: 379
Number of HSP's better than 10.0 without gapping: 23649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24159
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
