Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013050A_C01 KMC013050A_c01
(753 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO22726.1| unknown protein [Arabidopsis thaliana] 134 1e-30
ref|NP_197410.1| putative protein; protein id: At5g19090.1 [Arab... 134 1e-30
ref|NP_566273.1| expressed protein; protein id: At3g06130.1, sup... 118 1e-25
ref|NP_187173.1| unknown protein; protein id: At3g05220.1 [Arabi... 108 1e-22
gb|AAL13864.1| LD33277p [Drosophila melanogaster] 53 5e-06
>gb|AAO22726.1| unknown protein [Arabidopsis thaliana]
Length = 473
Score = 134 bits (337), Expect = 1e-30
Identities = 80/152 (52%), Positives = 89/152 (57%), Gaps = 34/152 (22%)
Frame = -2
Query: 725 PQTGNIQAVQGLPAAAVNGGG-----------YFQG------GAGPDVMPGNPYQQQLQQ 597
P + N+QAVQGLPA GGG YFQG G G D MPGNPY QQ
Sbjct: 332 PMSNNMQAVQGLPAMGPGGGGGGGPSAEAPPGYFQGQVSGNGGGGQDSMPGNPYLQQ--- 388
Query: 596 QQQQMQQQQYMAAMMNQQRAMAAGGGGGGGIQQPMMYARPPPAVNYM-----------YP 450
QQQ QQQQY+AA+MNQQR+M G QPMMYARPPPAVNYM YP
Sbjct: 389 -QQQQQQQQYLAAVMNQQRSM------GNERFQPMMYARPPPAVNYMPPQPQPHQQHPYP 441
Query: 449 PPYTYPPQ------DPYTHFFSDENTSSCNVM 372
PY YPPQ D Y+ +F+DENTSSCN+M
Sbjct: 442 YPYPYPPQYPPHNGDQYSDYFNDENTSSCNIM 473
>ref|NP_197410.1| putative protein; protein id: At5g19090.1 [Arabidopsis thaliana]
Length = 587
Score = 134 bits (337), Expect = 1e-30
Identities = 80/152 (52%), Positives = 89/152 (57%), Gaps = 34/152 (22%)
Frame = -2
Query: 725 PQTGNIQAVQGLPAAAVNGGG-----------YFQG------GAGPDVMPGNPYQQQLQQ 597
P + N+QAVQGLPA GGG YFQG G G D MPGNPY QQ
Sbjct: 446 PMSNNMQAVQGLPAMGPGGGGGGGPSAEAPPGYFQGQVSGNGGGGQDSMPGNPYLQQ--- 502
Query: 596 QQQQMQQQQYMAAMMNQQRAMAAGGGGGGGIQQPMMYARPPPAVNYM-----------YP 450
QQQ QQQQY+AA+MNQQR+M G QPMMYARPPPAVNYM YP
Sbjct: 503 -QQQQQQQQYLAAVMNQQRSM------GNERFQPMMYARPPPAVNYMPPQPQPHQQHPYP 555
Query: 449 PPYTYPPQ------DPYTHFFSDENTSSCNVM 372
PY YPPQ D Y+ +F+DENTSSCN+M
Sbjct: 556 YPYPYPPQYPPHNGDQYSDYFNDENTSSCNIM 587
>ref|NP_566273.1| expressed protein; protein id: At3g06130.1, supported by cDNA:
gi_11908103, supported by cDNA: gi_13194807, supported
by cDNA: gi_15010767 [Arabidopsis thaliana]
gi|6862917|gb|AAF30306.1|AC018907_6 hypothetical protein
[Arabidopsis thaliana]
gi|11908104|gb|AAG41481.1|AF326899_1 unknown protein
[Arabidopsis thaliana]
gi|13194808|gb|AAK15566.1|AF349519_1 unknown protein
[Arabidopsis thaliana] gi|15010768|gb|AAK74043.1|
AT3g06130/F28L1_7 [Arabidopsis thaliana]
gi|23506209|gb|AAN31116.1| At3g06130/F28L1_7
[Arabidopsis thaliana]
Length = 473
Score = 118 bits (295), Expect = 1e-25
Identities = 76/142 (53%), Positives = 82/142 (57%), Gaps = 19/142 (13%)
Frame = -2
Query: 740 MAMNHPQTGNIQAVQGLPAAAVNGG--GYFQGGAGPDVMPGNPYQQQLQQQQQQMQQQQY 567
M M P GN+ AVQGLPA G GYFQG AG D M Q QQQ QQQQY
Sbjct: 350 MGMGGPM-GNMPAVQGLPATGPGGAPQGYFQG-AGIDPM----------QMQQQQQQQQY 397
Query: 566 MAAMMNQQRAMAAGGGGGGGIQQPMMYARPPPAVNYM--------------YPPPYTYPP 429
+AA+MNQQRAM G QPMMYARPPPAVNYM YP PY YPP
Sbjct: 398 LAAVMNQQRAM------GNERFQPMMYARPPPAVNYMPPNPHQYPNPHPYPYPYPYPYPP 451
Query: 428 ---QDPYTHFFSDENTSSCNVM 372
D Y+H FSDENTSSC++M
Sbjct: 452 PYGNDQYSHAFSDENTSSCDIM 473
>ref|NP_187173.1| unknown protein; protein id: At3g05220.1 [Arabidopsis thaliana]
gi|6729032|gb|AAF27028.1|AC009177_18 unknown protein
[Arabidopsis thaliana]
Length = 541
Score = 108 bits (269), Expect = 1e-22
Identities = 67/144 (46%), Positives = 75/144 (51%), Gaps = 17/144 (11%)
Frame = -2
Query: 752 GPMSM-------AMNHPQTGNIQAVQGLPAAAVNGGGYFQGGAGPDVMPGNPYQQQLQQQ 594
GPMSM Q G+ AVQGLP + GGGY+ PG P Q
Sbjct: 415 GPMSMMGPGGPMGPMGGQGGSYPAVQGLPMSG--GGGYY---------PGPP------QA 457
Query: 593 QQQMQQQQYMAAMMNQQRAMAA----------GGGGGGGIQQPMMYARPPPAVNYMYPPP 444
QQM QQQYM MMNQQ+ GGG GG + PMMYARP PAVNY +PPP
Sbjct: 458 SQQMNQQQYMQMMMNQQQQQQQQQQAVAHGGYGGGHGGDMYHPMMYARPYPAVNYAHPPP 517
Query: 443 YTYPPQDPYTHFFSDENTSSCNVM 372
P D YTH FSDEN SC++M
Sbjct: 518 MPPPHSDSYTHMFSDENPGSCSIM 541
Score = 35.0 bits (79), Expect = 1.2
Identities = 26/79 (32%), Positives = 33/79 (40%)
Frame = -2
Query: 716 GNIQAVQGLPAAAVNGGGYFQGGAGPDVMPGNPYQQQLQQQQQQMQQQQYMAAMMNQQRA 537
GN + G + V G GG G + G P Q QQ QQ M +
Sbjct: 66 GNNKPKGGKESNQVKGKAGGGGGGGQNHGHGQPMQLNPQQIQQMMMMKA----------- 114
Query: 536 MAAGGGGGGGIQQPMMYAR 480
A GGGGGG ++ P M A+
Sbjct: 115 -AHGGGGGGQMKMPPMAAK 132
>gb|AAL13864.1| LD33277p [Drosophila melanogaster]
Length = 748
Score = 52.8 bits (125), Expect = 5e-06
Identities = 36/74 (48%), Positives = 38/74 (50%), Gaps = 4/74 (5%)
Frame = -2
Query: 707 QAVQGLPAAAVNGGGYFQGGAGPDVMPGN----PYQQQLQQQQQQMQQQQYMAAMMNQQR 540
Q Q AA GG GGA GN P QQQ QQQQQQ+ QQQ M MMNQQ+
Sbjct: 323 QRQQSQNNAAAGGGAPGPGGALQQQQAGNGPQNPQQQQQQQQQQQVMQQQQMQHMMNQQQ 382
Query: 539 AMAAGGGGGGGIQQ 498
GGGG QQ
Sbjct: 383 -------GGGGPQQ 389
Score = 39.7 bits (91), Expect = 0.047
Identities = 29/76 (38%), Positives = 31/76 (40%)
Frame = -2
Query: 656 QGGAGPDVMPGNPYQQQLQQQQQQMQQQQYMAAMMNQQRAMAAGGGGGGGIQQPMMYARP 477
QGG GP M NP QQQ QQQ MQQQQ GG GG G P
Sbjct: 382 QGGGGPQQM--NPNQQQQQQQVNLMQQQQ-------------QGGPGGPGSGLPTRMPNM 426
Query: 476 PPAVNYMYPPPYTYPP 429
P A+ + P P
Sbjct: 427 PNALGMLQSLPPNMSP 442
Score = 39.3 bits (90), Expect = 0.061
Identities = 37/111 (33%), Positives = 42/111 (37%), Gaps = 13/111 (11%)
Frame = -2
Query: 737 AMNHPQTGNIQAVQGLPAAAVNGGGYFQGGAGPDVMPGNPYQQQLQQQQQQMQQQQYMAA 558
A N Q Q G+ G G Q G + PG QQ QQQQQ +QQQQ M
Sbjct: 540 ASNMLQQQQGQVGVGVGVGVKPGPGQQQQQMGVGMPPG---MQQQQQQQQPLQQQQMMQV 596
Query: 557 MM---NQQRAMAAGGGGGGGI----------QQPMMYARPPPAVNYMYPPP 444
M N Q A GG + QQ M AR P + P P
Sbjct: 597 AMPNANAQNPSAVVGGPNAQVMGPPTPHSLQQQLMQSARSSPPIRSPQPTP 647
Score = 33.1 bits (74), Expect = 4.4
Identities = 32/101 (31%), Positives = 41/101 (39%), Gaps = 16/101 (15%)
Frame = -2
Query: 752 GPMSMAMNHP-QTGNIQAVQGLPAAAVNGGGYFQGGAGPDVMP-------GNPYQQQLQQ 597
G M M M P G + V+ P A GG GG + NP + Q
Sbjct: 246 GGMGMGMGAPPMAGTVGGVRPSPGAGGGGGSATGGGLNTQQLALIMQKIKNNPTNESNQH 305
Query: 596 QQQQMQQQ-QYMAAMMNQ----QRAMAAGGGG---GGGIQQ 498
++Q Q MAA++ Q Q AAGGG GG +QQ
Sbjct: 306 ILAILKQNPQIMAAIIKQRQQSQNNAAAGGGAPGPGGALQQ 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 724,710,023
Number of Sequences: 1393205
Number of extensions: 18431012
Number of successful extensions: 269819
Number of sequences better than 10.0: 2012
Number of HSP's better than 10.0 without gapping: 84582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193779
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
