Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013019A_C01 KMC013019A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52299 squamosa promoter binding protein-homolog 3 [importe... 125 6e-28
ref|NP_683267.1| similar to squamosa promoter-binding protein ho... 121 8e-27
dbj|BAC42797.1| putative squamosa promoter binding protein 8 SPL... 120 1e-26
sp|O04003|LG1_MAIZE LIGULELESS1 PROTEIN gi|7489786|pir||T04328 l... 86 4e-16
emb|CAB56627.1| SBP-domain protein 1 [Zea mays] 82 6e-15
>pir||T52299 squamosa promoter binding protein-homolog 3 [imported] - garden
snapdragon gi|5931639|emb|CAB56568.1| squamosa promoter
binding protein-homologue 3 [Antirrhinum majus]
Length = 305
Score = 125 bits (313), Expect = 6e-28
Identities = 70/129 (54%), Positives = 87/129 (67%), Gaps = 20/129 (15%)
Frame = -2
Query: 621 ATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQEIQKS---- 454
A V+AAGLTQRFCQQCSRFH+LSEFDNGKRSCR+RLADHNRRRRK+ Q + S
Sbjct: 177 ANVVAAGLTQRFCQQCSRFHVLSEFDNGKRSCRRRLADHNRRRRKSSQQANSQENSGKSQ 236
Query: 453 ---------TTALDNIARSPADSGTQPSSSVTVAVSPP----DYFRPRPYN---QSTSPS 322
++ +N+ RSP DSG SSSVT VSPP D F RPY+ S+S +
Sbjct: 237 LQGNNAAAPNSSSENLPRSPPDSGAH-SSSVTAGVSPPRISLDCFGHRPYSGGATSSSTA 295
Query: 321 NSSSLFFSS 295
+++SLF+S+
Sbjct: 296 STTSLFYSN 304
>ref|NP_683267.1| similar to squamosa promoter-binding protein homolog; protein id:
At1g02065.1 [Arabidopsis thaliana]
gi|25456664|pir||T52594 squamosa promoter binding
protein 8 [imported] - Arabidopsis thaliana
gi|5931679|emb|CAB56593.1| squamosa promoter binding
protein-like 8 [Arabidopsis thaliana]
gi|5931681|emb|CAB56594.1| squamosa promoter binding
protein-like 8 [Arabidopsis thaliana]
Length = 333
Score = 121 bits (303), Expect = 8e-27
Identities = 70/118 (59%), Positives = 82/118 (69%), Gaps = 8/118 (6%)
Frame = -2
Query: 621 ATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQEIQKSTTAL 442
+TV+AAGL+QRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK QS Q + T
Sbjct: 217 STVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASATQDTGTG- 275
Query: 441 DNIARSPADSGTQPSSSVTVAVSPP---DYFRPRPY----NQSTSPSNSS-SLFFSSG 292
+SP DSG + SSS + P + FR R + + STS S+SS S+FFSSG
Sbjct: 276 KTTPKSPNDSGVKASSSPSSNAPPTISLECFRQRQFQTTASSSTSASSSSNSMFFSSG 333
>dbj|BAC42797.1| putative squamosa promoter binding protein 8 SPL8 [Arabidopsis
thaliana]
Length = 333
Score = 120 bits (302), Expect = 1e-26
Identities = 70/118 (59%), Positives = 82/118 (69%), Gaps = 8/118 (6%)
Frame = -2
Query: 621 ATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQEIQKSTTAL 442
+TV+AAGL+QRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRK QS Q + T
Sbjct: 217 STVVAAGLSQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKCHQSASATQDTGTG- 275
Query: 441 DNIARSPADSGTQPSSSVTVAVSPP---DYFRPRPY----NQSTSPSNSS-SLFFSSG 292
+SP DSG + SSS + P + FR R + + STS S+SS S+FFSSG
Sbjct: 276 KTTPKSPNDSGVKASSSPSSNAPPTISLECFRQRRFQTTASSSTSASSSSNSMFFSSG 333
>sp|O04003|LG1_MAIZE LIGULELESS1 PROTEIN gi|7489786|pir||T04328 liguleless1 protein -
maize gi|1914845|gb|AAB51071.1| liguleless1 protein [Zea
mays] gi|17940734|gb|AAL49746.1|AF451895_1 LIGULELESS1
[Zea mays]
Length = 399
Score = 85.9 bits (211), Expect = 4e-16
Identities = 42/78 (53%), Positives = 51/78 (64%)
Frame = -2
Query: 615 VIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQEIQKSTTALDN 436
V A GL QRFCQQCSRFHLL EFD+ K+SCRKRLADHNRRRRK++ S + A N
Sbjct: 217 VTAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKPSDADAGDKKRAHAN 276
Query: 435 IARSPADSGTQPSSSVTV 382
A + D S ++ +
Sbjct: 277 KAAAAKDKAESSSKNMDI 294
>emb|CAB56627.1| SBP-domain protein 1 [Zea mays]
Length = 440
Score = 82.0 bits (201), Expect = 6e-15
Identities = 45/90 (50%), Positives = 55/90 (61%), Gaps = 6/90 (6%)
Frame = -2
Query: 621 ATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQSTQE------IQ 460
+ V AAG QRFCQQCSRFH+L+EFD KRSCRKRL +HNRRRRK + E +
Sbjct: 240 SAVAAAGKQQRFCQQCSRFHVLAEFDEAKRSCRKRLTEHNRRRRKPSSAQDEDSSPPPPK 299
Query: 459 KSTTALDNIARSPADSGTQPSSSVTVAVSP 370
K T + N A S D S++ A+SP
Sbjct: 300 KLDTCITNTA-SYNDDLKSASNTAAAAISP 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 486,795,410
Number of Sequences: 1393205
Number of extensions: 9765557
Number of successful extensions: 30319
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 27805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30075
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
