Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013005A_C01 KMC013005A_c01
(707 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200925.1| 40S ribsomal protein S19 - like; protein id: At... 253 2e-66
ref|NP_186857.1| putative 40S ribosomal protein S19; protein id:... 252 4e-66
ref|NP_197056.1| 40S RIBOSOMAL PROTEIN S19 - like; protein id: A... 250 1e-65
sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19 237 1e-61
emb|CAA10125.1| 40S ribosomal protein S19 [Cicer arietinum] 201 6e-51
>ref|NP_200925.1| 40S ribsomal protein S19 - like; protein id: At5g61170.1
[Arabidopsis thaliana] gi|27923837|sp|Q9FNP8|R193_ARATH
40S ribosomal protein S19-3 gi|9759463|dbj|BAB10379.1|
40S ribosomal protein S19 [Arabidopsis thaliana]
Length = 143
Score = 253 bits (645), Expect = 2e-66
Identities = 119/135 (88%), Positives = 129/135 (95%)
Frame = +2
Query: 74 RTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYIRAASMARK 253
+TVKDVSPHEFVKAYAAHLKRSGK+ELP WTDIVKT + KELAPYDPDWYYIRAASMARK
Sbjct: 5 KTVKDVSPHEFVKAYAAHLKRSGKIELPLWTDIVKTGKLKELAPYDPDWYYIRAASMARK 64
Query: 254 IYLRGGLGVGAFQRIYGGSHRNGSRPPHFCKSSGSIARHILQQLQTMHIIELDNKGGRKI 433
+YLRGGLGVGAF+RIYGGS RNGSRPPHFCKSSG +ARHILQQLQTM+I++LD KGGRKI
Sbjct: 65 VYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLDTKGGRKI 124
Query: 434 TSSGRRDLDQVAGRI 478
TSSG+RDLDQVAGRI
Sbjct: 125 TSSGQRDLDQVAGRI 139
>ref|NP_186857.1| putative 40S ribosomal protein S19; protein id: At3g02080.1,
supported by cDNA: 41619., supported by cDNA:
gi_13878028, supported by cDNA: gi_17104594 [Arabidopsis
thaliana] gi|27923843|sp|Q9SGA6|R191_ARATH 40S ribosomal
protein S19-1 gi|6513924|gb|AAF14828.1|AC011664_10
putative 40S ribosomal protein S19 [Arabidopsis
thaliana] gi|13878029|gb|AAK44092.1|AF370277_1 putative
40S ribosomal protein S19 [Arabidopsis thaliana]
gi|17104595|gb|AAL34186.1| putative 40S ribosomal
protein S19 [Arabidopsis thaliana]
gi|21593712|gb|AAM65679.1| putative 40S ribosomal
protein S19 [Arabidopsis thaliana]
Length = 143
Score = 252 bits (643), Expect = 4e-66
Identities = 118/137 (86%), Positives = 130/137 (94%)
Frame = +2
Query: 74 RTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYIRAASMARK 253
+TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT + KELAPYDPDWYYIRAASMARK
Sbjct: 5 KTVKDVSPHDFVKAYASHLKRSGKIELPTWTDIVKTGKLKELAPYDPDWYYIRAASMARK 64
Query: 254 IYLRGGLGVGAFQRIYGGSHRNGSRPPHFCKSSGSIARHILQQLQTMHIIELDNKGGRKI 433
+YLRGGLGVGAF+RIYGGS RNGSRPPHFCKSSG IARHILQQL+TM+I+ELD KGGR+I
Sbjct: 65 VYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELDTKGGRRI 124
Query: 434 TSSGRRDLDQVAGRIVV 484
TSSG+RDLDQVAGRI V
Sbjct: 125 TSSGQRDLDQVAGRIAV 141
>ref|NP_197056.1| 40S RIBOSOMAL PROTEIN S19 - like; protein id: At5g15520.1,
supported by cDNA: 255203. [Arabidopsis thaliana]
gi|27923841|sp|Q9LF30|R192_ARATH 40S ribosomal protein
S19-2 gi|11276633|pir||T51530 40S RIBOSOMAL PROTEIN
S19-like - Arabidopsis thaliana
gi|9755807|emb|CAC01751.1| 40S RIBOSOMAL PROTEIN
S19-like [Arabidopsis thaliana]
gi|21554401|gb|AAM63506.1| 40S ribosomal protein
S19-like [Arabidopsis thaliana]
gi|28466827|gb|AAO44022.1| At5g15520 [Arabidopsis
thaliana]
Length = 143
Score = 250 bits (639), Expect = 1e-65
Identities = 119/135 (88%), Positives = 128/135 (94%)
Frame = +2
Query: 74 RTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYIRAASMARK 253
+TVKDVSPH+FVKAYA+HLKRSGK+ELP WTDIVKT R KELAPYDPDWYYIRAASMARK
Sbjct: 5 KTVKDVSPHDFVKAYASHLKRSGKIELPLWTDIVKTGRLKELAPYDPDWYYIRAASMARK 64
Query: 254 IYLRGGLGVGAFQRIYGGSHRNGSRPPHFCKSSGSIARHILQQLQTMHIIELDNKGGRKI 433
IYLRGGLGVGAF+RIYGGS RNGSRPPHFCKSSG IARHILQQL+TM I+ELD KGGR+I
Sbjct: 65 IYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELDTKGGRRI 124
Query: 434 TSSGRRDLDQVAGRI 478
TSSG+RDLDQVAGRI
Sbjct: 125 TSSGQRDLDQVAGRI 139
>sp|P40978|RS19_ORYSA 40S RIBOSOMAL PROTEIN S19
Length = 146
Score = 237 bits (604), Expect = 1e-61
Identities = 113/137 (82%), Positives = 124/137 (90%)
Frame = +2
Query: 74 RTVKDVSPHEFVKAYAAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYIRAASMARK 253
RTVKDV+PHEFVKAY+AHLKRSGKMELPEW DIVKTARFKEL PYDPDWYY RAAS+ARK
Sbjct: 7 RTVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARK 66
Query: 254 IYLRGGLGVGAFQRIYGGSHRNGSRPPHFCKSSGSIARHILQQLQTMHIIELDNKGGRKI 433
IYLR G+GVG FQ+IYGG RNGSRPPHFCKSSG+I+R+ILQQLQ M II++D KGGR I
Sbjct: 67 IYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLI 126
Query: 434 TSSGRRDLDQVAGRIVV 484
TS GRRDLDQVAGR+ V
Sbjct: 127 TSQGRRDLDQVAGRVDV 143
>emb|CAA10125.1| 40S ribosomal protein S19 [Cicer arietinum]
Length = 105
Score = 201 bits (512), Expect = 6e-51
Identities = 97/103 (94%), Positives = 100/103 (96%)
Frame = +2
Query: 176 KTARFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFQRIYGGSHRNGSRPPHFCKSSG 355
KTARFKELAPYDPDWYY+RAASMARKIYLRGGLGVGAFQRIYGGS RNGSRPPHFCKSSG
Sbjct: 1 KTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSG 60
Query: 356 SIARHILQQLQTMHIIELDNKGGRKITSSGRRDLDQVAGRIVV 484
SIARHILQQLQ M+IIE+D KGGRKITSSGRRDLDQVAGRIVV
Sbjct: 61 SIARHILQQLQNMNIIEMDTKGGRKITSSGRRDLDQVAGRIVV 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 621,379,200
Number of Sequences: 1393205
Number of extensions: 14004016
Number of successful extensions: 66507
Number of sequences better than 10.0: 124
Number of HSP's better than 10.0 without gapping: 56931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65937
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32373034405
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
