Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC013003A_C01 KMC013003A_c01
(477 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P11940|PAB1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-bi... 31 7.8
sp|Q15097|PAB2_HUMAN Polyadenylate-binding protein 2 (Poly(A)-bi... 31 7.8
dbj|BAC56450.1| similar to poly(A)-binding protein 1 [Bos taurus] 31 7.8
sp|P20965|PAB1_XENLA Polyadenylate-binding protein 1 (Poly(A)-bi... 31 7.8
emb|CAA40721.1| polyA binding protein [Xenopus laevis] 31 7.8
>sp|P11940|PAB1_HUMAN Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1) gi|1562511|gb|AAD08718.1| poly(A)-binding protein
[Homo sapiens] gi|8979741|emb|CAB96752.1|
polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1|AAH15958 Unknown (protein for
MGC:15290) [Homo sapiens] gi|23270713|gb|AAH23520.1|
Unknown (protein for MGC:12727) [Homo sapiens]
Length = 636
Score = 30.8 bits (68), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QRKVQILKLVHPTITLKIIGIILDLYQSHLLH 228
+R +++ +HPT+ KI G++L++ S LLH
Sbjct: 564 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
>sp|Q15097|PAB2_HUMAN Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP
2) gi|1082703|pir||S52491 polyadenylate binding protein
II - human gi|693937|emb|CAA88401.1| polyadenylate
binding protein II [Homo sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QRKVQILKLVHPTITLKIIGIILDLYQSHLLH 228
+R +++ +HPT+ KI G++L++ S LLH
Sbjct: 450 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 481
>dbj|BAC56450.1| similar to poly(A)-binding protein 1 [Bos taurus]
Length = 138
Score = 30.8 bits (68), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QRKVQILKLVHPTITLKIIGIILDLYQSHLLH 228
+R +++ +HPT+ KI G++L++ S LLH
Sbjct: 76 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 107
>sp|P20965|PAB1_XENLA Polyadenylate-binding protein 1 (Poly(A)-binding protein 1) (PABP
1) gi|538582|pir||DNXLPA polyadenylate-binding protein -
African clawed frog gi|623598|gb|AAA60936.1|
poly(A)-binding protein
Length = 633
Score = 30.8 bits (68), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QRKVQILKLVHPTITLKIIGIILDLYQSHLLH 228
+R +++ +HPT+ KI G++L++ S LLH
Sbjct: 562 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 593
>emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 30.8 bits (68), Expect = 7.8
Identities = 12/32 (37%), Positives = 22/32 (68%)
Frame = +1
Query: 133 QRKVQILKLVHPTITLKIIGIILDLYQSHLLH 228
+R +++ +HPT+ KI G++L++ S LLH
Sbjct: 562 ERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,850,068
Number of Sequences: 1393205
Number of extensions: 7697349
Number of successful extensions: 14500
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14498
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
