Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012994A_C01 KMC012994A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196460.1| putative protein; protein id: At5g08430.1 [Arab... 62 7e-09
dbj|BAB90383.1| B1065E10.34 [Oryza sativa (japonica cultivar-gro... 57 1e-07
ref|NP_179239.1| unknown protein; protein id: At2g16470.1 [Arabi... 57 2e-07
dbj|BAB09564.1| emb|CAB62634.1~gene_id:K19M13.11~similar to unkn... 55 7e-07
ref|NP_568434.1| Expressed protein; protein id: At5g23480.1, sup... 55 7e-07
>ref|NP_196460.1| putative protein; protein id: At5g08430.1 [Arabidopsis thaliana]
gi|10178285|emb|CAC08343.1| putative protein
[Arabidopsis thaliana]
Length = 509
Score = 61.6 bits (148), Expect = 7e-09
Identities = 36/96 (37%), Positives = 54/96 (55%), Gaps = 7/96 (7%)
Frame = -2
Query: 532 KVSISTADVIELSDSDEEDVNVADASAGEKMESPGISI-------WHCLGPSGEKRGPYS 374
+V + ++VIELSD DE+D N + K+E + W P G +GP+S
Sbjct: 412 QVQPNPSEVIELSDDDEDD-NGDGETLDPKVEDVRVLSYDKEKLNWLYKDPQGLVQGPFS 470
Query: 373 MSVLKCWSESVTHPIKFKVWKTGQSEEEAILLTDAL 266
++ LK WS++ +F+VW TG+S E A+LLTD L
Sbjct: 471 LTQLKAWSDAEYFTKQFRVWMTGESMESAVLLTDVL 506
>dbj|BAB90383.1| B1065E10.34 [Oryza sativa (japonica cultivar-group)]
Length = 822
Score = 57.4 bits (137), Expect = 1e-07
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Frame = -2
Query: 469 VADASAGEKMESPGIS--IWHCLGPSGEKRGPYSMSVLKCWSESVTHPIKFKVWKTGQSE 296
+A A + M +PG IW+ P G+ +GP++M ++ W + P F+VW+ GQ++
Sbjct: 747 IAALHALQSMNAPGEHEYIWNYADPQGKVQGPFTMEHMRNWHRNRFFPPDFRVWRLGQTQ 806
Query: 295 EEAILLTDALNQKFPS 248
+++LLT+A+ KF S
Sbjct: 807 NDSVLLTEAMGLKFSS 822
>ref|NP_179239.1| unknown protein; protein id: At2g16470.1 [Arabidopsis thaliana]
gi|25411712|pir||F84540 hypothetical protein At2g16470
[imported] - Arabidopsis thaliana
gi|4544404|gb|AAD22314.1| unknown protein [Arabidopsis
thaliana]
Length = 670
Score = 56.6 bits (135), Expect = 2e-07
Identities = 23/52 (44%), Positives = 36/52 (69%)
Frame = -2
Query: 421 IWHCLGPSGEKRGPYSMSVLKCWSESVTHPIKFKVWKTGQSEEEAILLTDAL 266
IWH PSG+ +GP+SM+ L+ W+ + P K ++WK +S +++LLTDAL
Sbjct: 195 IWHYKDPSGKVQGPFSMAQLRKWNNTGYFPAKLEIWKANESPLDSVLLTDAL 246
>dbj|BAB09564.1| emb|CAB62634.1~gene_id:K19M13.11~similar to unknown protein
[Arabidopsis thaliana]
Length = 581
Score = 55.1 bits (131), Expect = 7e-07
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = -2
Query: 511 DVIELSDSDEEDVNVADASAGEKMESPGISIWHCLGPSGEKRGPYSMSVLKCWS--ESVT 338
++IELSD D++D + A + + P +W P G+ GP+S++ LK WS E
Sbjct: 497 EIIELSDDDDDDEKDKNDQAYQSYD-PKKVMWFYEYPKGKTHGPFSLTDLKTWSDEEYFV 555
Query: 337 HPIKFKVWKTGQSEEEAILLTDALNQ 260
FKVWKTG+S A+LLT L+Q
Sbjct: 556 GVPDFKVWKTGES---AVLLTKLLSQ 578
>ref|NP_568434.1| Expressed protein; protein id: At5g23480.1, supported by cDNA:
25501. [Arabidopsis thaliana] gi|21554398|gb|AAM63503.1|
unknown [Arabidopsis thaliana]
Length = 113
Score = 55.1 bits (131), Expect = 7e-07
Identities = 34/86 (39%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = -2
Query: 511 DVIELSDSDEEDVNVADASAGEKMESPGISIWHCLGPSGEKRGPYSMSVLKCWS--ESVT 338
++IELSD D++D + A + + P +W P G+ GP+S++ LK WS E
Sbjct: 29 EIIELSDDDDDDEKDKNDQAYQSYD-PKKVMWFYEYPKGKTHGPFSLTDLKTWSDEEYFV 87
Query: 337 HPIKFKVWKTGQSEEEAILLTDALNQ 260
FKVWKTG+S A+LLT L+Q
Sbjct: 88 GVPDFKVWKTGES---AVLLTKLLSQ 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,899,299
Number of Sequences: 1393205
Number of extensions: 10187934
Number of successful extensions: 25828
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25799
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
