Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012975A_C01 KMC012975A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_704964.1| hypothetical protein [Plasmodium falciparum 3D7... 32 6.6
pir||T15202 hypothetical protein F12B6.3 - Caenorhabditis elegans 32 6.6
ref|NP_490946.2| Ligand-gated ionic channel family member [Caeno... 32 6.6
gb|AAC72254.1| LctE [Lactococcus lactis subsp. lactis] 32 8.6
ref|XP_164913.1| hypothetical protein XP_164913 [Mus musculus] 32 8.6
>ref|NP_704964.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615209|emb|CAD52199.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4273
Score = 32.0 bits (71), Expect = 6.6
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Frame = +1
Query: 16 IFIVKLNLQQNHNILH----QHSYVKITFQVDVYKKNCKGQTYTILGKSKLL*KKT---- 171
IF++ N + +NI + + SY++I F+ + ++N Y L + L+ ++
Sbjct: 622 IFLINANCRHQNNICYLEKNKQSYIQIIFKKEKGQEN----NYLFLSTNLLMPQENNNNN 677
Query: 172 LIAMNFQGNKKLLLMIYF--NH*LLSQTSYQINRMGKLQEGEQNLVNLCHCMG*E-NEGS 342
+ +N N L+ F N + T Y+IN +GK E+ ++N+ E N+ +
Sbjct: 678 ITYLNNSNNTMNPLVTLFINNQEIAKNTLYKINEIGK----EKEIINIKILNNTEKNKHT 733
Query: 343 LKNCTYLQHDEDWI 384
LKN T + D + I
Sbjct: 734 LKNKTNIILDTNLI 747
>pir||T15202 hypothetical protein F12B6.3 - Caenorhabditis elegans
Length = 594
Score = 32.0 bits (71), Expect = 6.6
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Frame = -1
Query: 619 FLSTNIFCILT---PTKV--G**GVASLSFEWNRDGASAPPAEFQH---LELCQAV**HV 464
F+S FCI T P ++ G + SL+F++ S PP + L +C V
Sbjct: 377 FISWIAFCIDTKALPARIVLGVNSLMSLTFQFGNIIRSLPPVSYVKAIDLWMCTCV---- 432
Query: 463 WINFFFLSII*NSLATYRSS*MIRTNISSLHRAASMCSSSNYLHFLNPYSDINLPGFAPP 284
F F S++ + Y+ +I + S A++ + +YL PY D++ P PP
Sbjct: 433 --GFIFASLLELAFVAYQDKKLI---LKSGKSNAAISTLVSYLKHFEPYHDVSSP---PP 484
Query: 283 LVACPFCLFDKMSVTIASG*NIS 215
P MS T ++G N S
Sbjct: 485 --PAPLDEKKSMSRTTSTGTNRS 505
>ref|NP_490946.2| Ligand-gated ionic channel family member [Caenorhabditis elegans]
gi|16604151|gb|AAK21371.2| Hypothetical protein F12B6.3
[Caenorhabditis elegans]
Length = 509
Score = 32.0 bits (71), Expect = 6.6
Identities = 39/143 (27%), Positives = 62/143 (43%), Gaps = 8/143 (5%)
Frame = -1
Query: 619 FLSTNIFCILT---PTKV--G**GVASLSFEWNRDGASAPPAEFQH---LELCQAV**HV 464
F+S FCI T P ++ G + SL+F++ S PP + L +C V
Sbjct: 292 FISWIAFCIDTKALPARIVLGVNSLMSLTFQFGNIIRSLPPVSYVKAIDLWMCTCV---- 347
Query: 463 WINFFFLSII*NSLATYRSS*MIRTNISSLHRAASMCSSSNYLHFLNPYSDINLPGFAPP 284
F F S++ + Y+ +I + S A++ + +YL PY D++ P PP
Sbjct: 348 --GFIFASLLELAFVAYQDKKLI---LKSGKSNAAISTLVSYLKHFEPYHDVSSP---PP 399
Query: 283 LVACPFCLFDKMSVTIASG*NIS 215
P MS T ++G N S
Sbjct: 400 --PAPLDEKKSMSRTTSTGTNRS 420
>gb|AAC72254.1| LctE [Lactococcus lactis subsp. lactis]
Length = 250
Score = 31.6 bits (70), Expect = 8.6
Identities = 11/30 (36%), Positives = 22/30 (72%)
Frame = -1
Query: 169 FFSKVIYSYPVLYMSGLYNFFYTHLLEKLF 80
F++K I+++ ++ + GL+ FFY +L+ LF
Sbjct: 99 FYAKTIFAFLIILIFGLFQFFYINLIAILF 128
>ref|XP_164913.1| hypothetical protein XP_164913 [Mus musculus]
Length = 418
Score = 31.6 bits (70), Expect = 8.6
Identities = 18/44 (40%), Positives = 23/44 (51%)
Frame = -1
Query: 400 MIRTNISSLHRAASMCSSSNYLHFLNPYSDINLPGFAPPLVACP 269
+I NISSL R S S S Y L+P + ++PG L CP
Sbjct: 181 LIALNISSLLRMLSGSSESRYGDVLSPLAPFSVPGERSRLWPCP 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,165,872
Number of Sequences: 1393205
Number of extensions: 10114282
Number of successful extensions: 21859
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21847
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
