Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012972A_C01 KMC012972A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknow... 59 4e-08
ref|NP_190640.1| F-box protein; protein id: At3g50710.1 [Arabido... 59 5e-08
ref|NP_190472.1| F-box protein; protein id: At3g49030.1 [Arabido... 57 1e-07
ref|NP_190471.1| F-box protein; protein id: At3g49020.1 [Arabido... 56 4e-07
ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabido... 55 7e-07
>dbj|BAB11268.1| emb|CAB62440.1~gene_id:MCD7.16~similar to unknown protein
[Arabidopsis thaliana]
Length = 450
Score = 59.3 bits (142), Expect = 4e-08
Identities = 46/140 (32%), Positives = 69/140 (48%), Gaps = 5/140 (3%)
Frame = -3
Query: 544 MFHNLTRVELVYTGHTRDWLDVVEFL-KYCPKLQVLVIKQPQVDGYYTVGELRGND---- 380
+F L +EL ++ WL+++ L PKL+VL + D Y+ LR +
Sbjct: 318 IFSQLDHLELCTCDDSK-WLNILAMLLPDSPKLRVLKLN----DKYHP---LRAKEPRPR 369
Query: 379 WQYPSSVPKCILFHLKECYLNNYRGTKGEFKFARYIMRNGRFLKKMTICKCTAVKQLGKP 200
W PSSVP+CIL+ L+ +Y G + E + +I RNG LKK TI ++ K
Sbjct: 370 WNEPSSVPECILYSLETFKWVHYEGMEEEKELVGFIFRNGSLLKKATIIPPNSIDSDTKL 429
Query: 199 NDIKKLFSCSARSATCKLYF 140
+ +L S RS C+L F
Sbjct: 430 EMLMELSLSSRRSPICQLEF 449
>ref|NP_190640.1| F-box protein; protein id: At3g50710.1 [Arabidopsis thaliana]
gi|11358338|pir||T46148 hypothetical protein T3A5.90 -
Arabidopsis thaliana gi|6561974|emb|CAB62440.1| putative
protein [Arabidopsis thaliana]
Length = 427
Score = 58.9 bits (141), Expect = 5e-08
Identities = 40/134 (29%), Positives = 68/134 (49%), Gaps = 2/134 (1%)
Frame = -3
Query: 541 FHNLTRVELVYTGHTRDWLDVVEF-LKYCPKLQVLVIKQPQVDGYYTVGELRGNDWQYPS 365
F+ L +EL G W D++ + L+ PKLQVL I + + + + + + W+ PS
Sbjct: 293 FYQLVHLELC--GDALMWWDLLTWMLQSSPKLQVLKIYECKCEEHDYLDDPIEEHWEEPS 350
Query: 364 SVPKCILFHLKECYLNNYRGTKGEFKFARYIMRNGRFLKKMTICKCTAV-KQLGKPNDIK 188
SVP+C+LFHL Y E K YI++N R LK T + + + + ++
Sbjct: 351 SVPQCLLFHLNIFEWKYYNAGDEEKKVVAYILKNARQLKTATFSAASYLYPKEERSRELN 410
Query: 187 KLFSCSARSATCKL 146
+L + S++C+L
Sbjct: 411 ELVYMARASSSCQL 424
>ref|NP_190472.1| F-box protein; protein id: At3g49030.1 [Arabidopsis thaliana]
gi|11358278|pir||T46127 hypothetical protein T2J13.130 -
Arabidopsis thaliana gi|6522563|emb|CAB62007.1| putative
protein [Arabidopsis thaliana]
Length = 443
Score = 57.4 bits (137), Expect = 1e-07
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Frame = -3
Query: 496 RDWLDVVE-FLKYCPKLQVLVIKQPQVDGYYTVGE-LRGNDWQYPSSVPKCILFHLKECY 323
R+W +++ L+ PKLQ+L ++ G + + L G +W P VP+C+LFHL++
Sbjct: 322 REWWNLLSRMLESSPKLQIL-----KLTGLSCIEKGLDGQNWNPPKCVPECLLFHLEKFL 376
Query: 322 LNNYRGTKGEFK-FARYIMRNGRFLKKMTI-CKCTAVKQLGKPND-IKKLFSCSARSATC 152
Y +G+ K A YI+ N R LKK T K ++ L K + + +L S + S +C
Sbjct: 377 WTGYEWQRGDEKEVATYILENARLLKKATFSTKRIDLENLEKRREMLNELASVARASDSC 436
Query: 151 KLYF 140
L F
Sbjct: 437 HLVF 440
>ref|NP_190471.1| F-box protein; protein id: At3g49020.1 [Arabidopsis thaliana]
gi|11358279|pir||T46128 hypothetical protein T2J13.140 -
Arabidopsis thaliana gi|6522564|emb|CAB62008.1| putative
protein [Arabidopsis thaliana]
Length = 447
Score = 55.8 bits (133), Expect = 4e-07
Identities = 45/145 (31%), Positives = 76/145 (52%), Gaps = 9/145 (6%)
Frame = -3
Query: 544 MFHNLTRVELVYTGHTRDWLDVVEF-LKYCPKLQVLVIKQPQVDGYYTVGE--LRGNDWQ 374
+F+ L +EL ++ +W +++ F L PKLQ+L + VD Y E G +W
Sbjct: 307 IFYQLLSLEL--RAYSYEWWNLLWFMLDSSPKLQILKL----VDPYQFPKEDCSVGWEWS 360
Query: 373 YPSSVPKCILFHLKECYLNNYRGTKGEFK-FARYIMRNGRFLKKMTICK----CTAVKQL 209
P VP+C+LFHL+ Y + + K A YI++N R LKK T+ +++L
Sbjct: 361 RPKCVPECLLFHLETFVWTRYEWQREDEKAVATYILKNARCLKKATLSTKPIGSEELEKL 420
Query: 208 GKPND-IKKLFSCSARSATCKLYFK 137
GK + + +L + ++ S +C L F+
Sbjct: 421 GKRREMLNELATQASPSNSCNLVFE 445
>ref|NP_200455.1| F-box protein; protein id: At5g56440.1 [Arabidopsis thaliana]
gi|10177843|dbj|BAB11272.1|
emb|CAB62440.1~gene_id:MCD7.20~similar to unknown
protein [Arabidopsis thaliana]
Length = 430
Score = 55.1 bits (131), Expect = 7e-07
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Frame = -3
Query: 469 LKYCPKLQVLVIKQPQVDGYYTVGELRG---------NDWQYPSSVPKCILFHLKECYLN 317
L + PKL+VL +Q Q Y + L+ W+ PSSVPKC++ L+
Sbjct: 311 LNHTPKLRVLRFEQRQAKFYQLLDPLKRCCSSSVDVQTQWEQPSSVPKCLISSLETVEWI 370
Query: 316 NYRGTKGEFKFARYIMRNGRFLKKMTICKCTAVKQLGKPNDIKKL 182
+Y+G + E K Y++ N R LK M A++ L ND +KL
Sbjct: 371 DYKGREVEKKVVMYLLENSRQLKTM------AIRSLKSTNDNEKL 409
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,749,199
Number of Sequences: 1393205
Number of extensions: 9097984
Number of successful extensions: 20728
Number of sequences better than 10.0: 126
Number of HSP's better than 10.0 without gapping: 20309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20709
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
