Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012971A_C01 KMC012971A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P14544|COX1_LEITA Cytochrome c oxidase polypeptide I gi|83977... 34 1.1
gb|AAO21429.1| Prion-like-(q/n-rich)-domain-bearing protein prot... 33 2.5
ref|NP_510751.2| Q/N-rich domain Prion like protein PQN-34 (pqn-... 33 2.5
gb|AAD24774.1|AF120271_1 cytochrome c oxidase subunit 1 [Leishma... 33 3.3
gb|AAG13938.1|AF283103_1 polyprotein [Pineapple mealybug wilt as... 32 4.3
>sp|P14544|COX1_LEITA Cytochrome c oxidase polypeptide I gi|83977|pir||D30010
cytochrome-c oxidase (EC 1.9.3.1) chain I - Leishmania
tarentolae mitochondrion
Length = 549
Score = 34.3 bits (77), Expect = 1.1
Identities = 23/55 (41%), Positives = 29/55 (51%), Gaps = 4/55 (7%)
Frame = -1
Query: 251 SLYNCVFYLKGWLQPFCGNSVL*TLVDWCNIIL----LFSCNYCAFSFVFFWQLL 99
SLY C FY WL C + LVD+ +I+L L C +C F+FFWQ L
Sbjct: 493 SLY-CFFYFSTWLP--CVMVLYLLLVDFAHIVLDYLFLILC-FCFVFFIFFWQSL 543
>gb|AAO21429.1| Prion-like-(q/n-rich)-domain-bearing protein protein 34, isoform b
[Caenorhabditis elegans]
Length = 506
Score = 33.1 bits (74), Expect = 2.5
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 229 ISKVGFNPSVEIQFCRL*LIGVTLFCCSHVIIVPFHLYFSGSFYYL*DYNAMHCSIFL 56
++ + FN S + C+ L+ + LFC H+ + PFH YL D M+ + FL
Sbjct: 225 VADISFNDSATTRDCQYNLMLLQLFCRHHLAVDPFHFEIE-DLLYLRDSLQMNVNAFL 281
>ref|NP_510751.2| Q/N-rich domain Prion like protein PQN-34 (pqn-34) [Caenorhabditis
elegans] gi|21450559|gb|AAK68376.2|AC006633_5
Prion-like-(q/n-rich)-domain-bearing protein protein 34,
isoform a [Caenorhabditis elegans]
Length = 1142
Score = 33.1 bits (74), Expect = 2.5
Identities = 18/58 (31%), Positives = 29/58 (49%)
Frame = -2
Query: 229 ISKVGFNPSVEIQFCRL*LIGVTLFCCSHVIIVPFHLYFSGSFYYL*DYNAMHCSIFL 56
++ + FN S + C+ L+ + LFC H+ + PFH YL D M+ + FL
Sbjct: 225 VADISFNDSATTRDCQYNLMLLQLFCRHHLAVDPFHFEIE-DLLYLRDSLQMNVNAFL 281
>gb|AAD24774.1|AF120271_1 cytochrome c oxidase subunit 1 [Leishmania peruviana]
Length = 172
Score = 32.7 bits (73), Expect = 3.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = -1
Query: 242 NCVFYLKGWLQPFCGNSVL*TLVDWCNIIL----LFSCNYCAFSFVFFWQLL 99
+C FY WL C ++ LVD+ +I+L L C +C F FFWQ L
Sbjct: 118 HCFFYFSLWLP--CVMALYLLLVDFAHIVLDYLFLILC-FCFIFFFFFWQSL 166
>gb|AAG13938.1|AF283103_1 polyprotein [Pineapple mealybug wilt associated virus-2]
Length = 1839
Score = 32.3 bits (72), Expect = 4.3
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Frame = -2
Query: 469 CYSKYFT------RGITKLKVLF-------YHIAICIGDTSSRCIHILRHREVEGEIYFY 329
C S YFT RG T KV + +HI++C+ D+SS + + RH F+
Sbjct: 532 CISAYFTAPAVVARGGTVFKVQYEGYRLGYHHISLCLSDSSSASVSVQRHIRTS----FH 587
Query: 328 FQLVSRYPFINAPILQY 278
+ + P +N ++ +
Sbjct: 588 GKSIVMIPRLNNGVISF 604
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,652,136
Number of Sequences: 1393205
Number of extensions: 9520849
Number of successful extensions: 21677
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21643
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
