Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012957A_C01 KMC012957A_c01
(470 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00119063.1| hypothetical protein [Cytophaga hutchinsonii] 32 2.6
sp|Q9XSX7|AMBN_BOVIN Ameloblastin precursor 32 3.3
ref|NP_062341.1| glucose-6-phosphate dehydrogenase 2; glucose-6-... 32 3.3
ref|NP_776413.1| ameloblastin, enamel matrix protein [Bos taurus... 32 3.3
dbj|BAC24088.1| fork head [Achaearanea tepidariorum] 32 4.4
>ref|ZP_00119063.1| hypothetical protein [Cytophaga hutchinsonii]
Length = 384
Score = 32.3 bits (72), Expect = 2.6
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = -2
Query: 115 CIHISHKISYNHHICLHPHT 56
C+HISH+ YN+++ LHP++
Sbjct: 74 CVHISHEKEYNYNLFLHPYS 93
>sp|Q9XSX7|AMBN_BOVIN Ameloblastin precursor
Length = 392
Score = 32.0 bits (71), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = -1
Query: 425 QPPLASVTTLTSTVKNSYDVSTPQPSSWHSHPKMQQA---MPLLQAAPKPSP 279
Q P T +TS ++N+ PQP + HP +QQA M Q AP P
Sbjct: 108 QKPFLQPTVVTS-MQNAVQKGVPQPPIYQGHPPLQQAEGPMVEQQVAPSEKP 158
>ref|NP_062341.1| glucose-6-phosphate dehydrogenase 2; glucose-6-phosphate
dehydrogenase X-linked, pseudogene 1 [Mus musculus]
gi|6016086|sp|P97324|G6P2_MOUSE Glucose-6-phosphate
1-dehydrogenase 2 (G6PD) gi|1806126|emb|CAB06476.1|
glucose-6-phosphate dehydrogenase [Mus musculus]
Length = 513
Score = 32.0 bits (71), Expect = 3.3
Identities = 22/60 (36%), Positives = 26/60 (42%)
Frame = -2
Query: 334 TLKCNKPCPFFKPRRSHRHLTY***YKIRKMKNAYAHHEGCIAWL*CQCWCGFAANDTIR 155
T+ KP FF P S LTY YK K+ AY E I + C C F D +R
Sbjct: 403 TMMTKKPGMFFNPEESELDLTYGNKYKNVKLPGAY---ERLILDVFCGCQMHFVRTDELR 459
>ref|NP_776413.1| ameloblastin, enamel matrix protein [Bos taurus]
gi|5487869|gb|AAD39833.2| ameloblastin [Bos taurus]
Length = 397
Score = 32.0 bits (71), Expect = 3.3
Identities = 19/52 (36%), Positives = 25/52 (47%), Gaps = 3/52 (5%)
Frame = -1
Query: 425 QPPLASVTTLTSTVKNSYDVSTPQPSSWHSHPKMQQA---MPLLQAAPKPSP 279
Q P T +TS ++N+ PQP + HP +QQA M Q AP P
Sbjct: 113 QKPFLQPTVVTS-MQNAVQKGVPQPPIYQGHPPLQQAEGPMVEQQVAPSEKP 163
>dbj|BAC24088.1| fork head [Achaearanea tepidariorum]
Length = 406
Score = 31.6 bits (70), Expect = 4.4
Identities = 25/87 (28%), Positives = 41/87 (46%), Gaps = 14/87 (16%)
Frame = -1
Query: 467 LLHPTYLRLLVPLWQ----PPLASVTTLTSTVKNSYDVSTPQPSSWHSHP---------K 327
LL P + + P PP+ S+T L + N D+ T + +HS P K
Sbjct: 39 LLSPQNMAAVAPACMTQPMPPIGSITPLNNVAPNRTDMQTYVNTDYHSDPNLALKARNDK 98
Query: 326 MQQAMPLLQAAPKPSPLNIL-MMIQNS 249
++++P A P S ++++ M IQNS
Sbjct: 99 FRRSLP--HAKPPYSYISLITMAIQNS 123
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,412,771
Number of Sequences: 1393205
Number of extensions: 8983149
Number of successful extensions: 33682
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31385
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12524054526
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
