Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012897A_C01 KMC012897A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568851.1| putative protein; protein id: At5g57160.1 [Arab... 52 3e-06
gb|AAF91284.1|AF233527_1 DNA ligase IV [Arabidopsis thaliana] 52 3e-06
dbj|BAA97366.1| contains similarity to DNA ligase~gene_id:MUL3.1... 52 3e-06
ref|NP_420651.1| transcription-repair coupling factor [Caulobact... 32 5.2
ref|NP_463550.1| similar to Bacillus anthracis CapA protein (pol... 32 5.2
>ref|NP_568851.1| putative protein; protein id: At5g57160.1 [Arabidopsis thaliana]
Length = 1217
Score = 52.4 bits (124), Expect = 3e-06
Identities = 37/113 (32%), Positives = 49/113 (42%), Gaps = 25/113 (22%)
Frame = -1
Query: 491 IFVPEIEMTDRHNGHNSQVSEKLEILADPVQAMLFDMIPSLAPK---------------N 357
+ V E R+ + EKL+I DP+QAML M P + K N
Sbjct: 1105 VAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSNRTTGEYRKAN 1164
Query: 356 VEQPTASHREEKLPSNADSTTATT----------TKKKKVSYKAIAAELLKDW 228
V S + KL + D+T+ KKKKVSY+ +A ELLKDW
Sbjct: 1165 VSGECESSEKRKLDAETDNTSVNAGAESDVVPPLVKKKKVSYRDVAGELLKDW 1217
>gb|AAF91284.1|AF233527_1 DNA ligase IV [Arabidopsis thaliana]
Length = 1219
Score = 52.4 bits (124), Expect = 3e-06
Identities = 37/113 (32%), Positives = 49/113 (42%), Gaps = 25/113 (22%)
Frame = -1
Query: 491 IFVPEIEMTDRHNGHNSQVSEKLEILADPVQAMLFDMIPSLAPK---------------N 357
+ V E R+ + EKL+I DP+QAML M P + K N
Sbjct: 1107 VAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSNRTTGEYRKAN 1166
Query: 356 VEQPTASHREEKLPSNADSTTATT----------TKKKKVSYKAIAAELLKDW 228
V S + KL + D+T+ KKKKVSY+ +A ELLKDW
Sbjct: 1167 VSGECESSEKRKLDAETDNTSVNAGAESDVVPPLVKKKKVSYRDVAGELLKDW 1219
>dbj|BAA97366.1| contains similarity to DNA ligase~gene_id:MUL3.11 [Arabidopsis
thaliana]
Length = 1184
Score = 52.4 bits (124), Expect = 3e-06
Identities = 37/113 (32%), Positives = 49/113 (42%), Gaps = 25/113 (22%)
Frame = -1
Query: 491 IFVPEIEMTDRHNGHNSQVSEKLEILADPVQAMLFDMIPSLAPK---------------N 357
+ V E R+ + EKL+I DP+QAML M P + K N
Sbjct: 1072 VAVEEALQDSRNAKTEMDMKEKLQIHEDPLQAMLMKMFPIPSQKTTETSNRTTGEYRKAN 1131
Query: 356 VEQPTASHREEKLPSNADSTTATT----------TKKKKVSYKAIAAELLKDW 228
V S + KL + D+T+ KKKKVSY+ +A ELLKDW
Sbjct: 1132 VSGECESSEKRKLDAETDNTSVNAGAESDVVPPLVKKKKVSYRDVAGELLKDW 1184
>ref|NP_420651.1| transcription-repair coupling factor [Caulobacter crescentus CB15]
gi|25290802|pir||G87477 transcription-repair coupling
factor [imported] - Caulobacter crescentus
gi|13423283|gb|AAK23819.1| transcription-repair coupling
factor [Caulobacter crescentus CB15]
Length = 1155
Score = 31.6 bits (70), Expect = 5.2
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 398 AMLFDMIPSLAPKNVEQPTASHREEKLPSNADSTTATTTKKKKVSYKAIAAELL 237
A LFD +P+ A V+ R+E+L D+ A + +K +Y+ +A E L
Sbjct: 271 ATLFDYLPAGALIGVDNQATEARDERLAMIQDAYDARASADRKSAYRPLAPEAL 324
>ref|NP_463550.1| similar to Bacillus anthracis CapA protein (polyglutamate capsule
biosynthesis) [Listeria monocytogenes EGD-e]
gi|25513838|pir||AB1077 Bacillus anthracis capA protein
(polyglutamate capsule biosynthesis) homolog lmo0017
[imported] - Listeria monocytogenes (strain EGD-e)
gi|16409376|emb|CAC98232.1| similar to Bacillus
anthracis CapA protein (polyglutamate capsule
biosynthesis) [Listeria monocytogenes]
Length = 372
Score = 31.6 bits (70), Expect = 5.2
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = -1
Query: 389 FDMIPSLAPKNVEQPTASHREEKLPSN---ADSTTATTTKKKKVSYK 258
+D+ P LA K ++ P + REE S+ D TA TT+ KKV Y+
Sbjct: 71 WDLRPVLAEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQ 117
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,253,960
Number of Sequences: 1393205
Number of extensions: 7762430
Number of successful extensions: 20366
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 19573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20343
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
