Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012767A_C01 KMC012767A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566526.1| expressed protein; protein id: At3g15810.1, sup... 90 2e-17
gb|AAM63469.1| unknown [Arabidopsis thaliana] 90 2e-17
ref|NP_178129.1| hypothetical protein; protein id: At1g80120.1 [... 86 2e-16
dbj|BAB56075.1| P0665A11.21 [Oryza sativa (japonica cultivar-gro... 63 3e-09
gb|AAO13473.1| Hypothetical protein [Oryza sativa (japonica cult... 54 1e-06
>ref|NP_566526.1| expressed protein; protein id: At3g15810.1, supported by cDNA:
2528., supported by cDNA: gi_17380787, supported by
cDNA: gi_20259608 [Arabidopsis thaliana]
gi|11994353|dbj|BAB02312.1|
gb|AAD55470.1~gene_id:MSJ11.21~similar to unknown
protein [Arabidopsis thaliana]
gi|17380788|gb|AAL36224.1| unknown protein [Arabidopsis
thaliana] gi|20259609|gb|AAM14161.1| unknown protein
[Arabidopsis thaliana]
Length = 220
Score = 90.1 bits (222), Expect = 2e-17
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = -2
Query: 549 IEGCFSQRSCTFFNMMKESVAEIHRKVDPTTGVMLGKEVFSLSVKPGFDAAFAMGFVLVL 370
I+G FSQRSC ++ K +VAEI RKVD +T VMLG++VF+L +KPGFD AFAMG V+VL
Sbjct: 139 IDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVL 198
Query: 369 DHISGESFFDDDDDATAEPTVHPTI 295
D I+G DD + VHP +
Sbjct: 199 DQING-----DDPVEIGDEQVHPFV 218
>gb|AAM63469.1| unknown [Arabidopsis thaliana]
Length = 206
Score = 90.1 bits (222), Expect = 2e-17
Identities = 46/85 (54%), Positives = 59/85 (69%)
Frame = -2
Query: 549 IEGCFSQRSCTFFNMMKESVAEIHRKVDPTTGVMLGKEVFSLSVKPGFDAAFAMGFVLVL 370
I+G FSQRSC ++ K +VAEI RKVD +T VMLG++VF+L +KPGFD AFAMG V+VL
Sbjct: 125 IDGDFSQRSCLIYDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVL 184
Query: 369 DHISGESFFDDDDDATAEPTVHPTI 295
D I+G DD + VHP +
Sbjct: 185 DQING-----DDPVEIGDEQVHPFV 204
>ref|NP_178129.1| hypothetical protein; protein id: At1g80120.1 [Arabidopsis
thaliana] gi|25406633|pir||G96832 hypothetical protein
F18B13.20 [imported] - Arabidopsis thaliana
gi|5902368|gb|AAD55470.1|AC009322_10 Unknown protein
[Arabidopsis thaliana] gi|28393296|gb|AAO42075.1|
unknown protein [Arabidopsis thaliana]
gi|28827698|gb|AAO50693.1| unknown protein [Arabidopsis
thaliana]
Length = 210
Score = 86.3 bits (212), Expect = 2e-16
Identities = 47/85 (55%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = -2
Query: 549 IEGCFSQRSCTFFNM-MKESVAEIHRKVDPTTGVMLGKEVFSLSVKPGFDAAFAMGFVLV 373
IEG F R+CT + VAEI RKVD +T VMLGK+VFSL+VKPGFD AFAMG VLV
Sbjct: 127 IEGSFGARNCTVVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLV 186
Query: 372 LDHISGESFFDDDDDATAEPTVHPT 298
LD I G+ + E VHP+
Sbjct: 187 LDQIYGDDLLE-----VGEEQVHPS 206
>dbj|BAB56075.1| P0665A11.21 [Oryza sativa (japonica cultivar-group)]
Length = 227
Score = 62.8 bits (151), Expect = 3e-09
Identities = 39/87 (44%), Positives = 49/87 (55%), Gaps = 6/87 (6%)
Frame = -2
Query: 552 QIEGCFSQRSCTFFNMMKES------VAEIHRKVDPTTGVMLGKEVFSLSVKPGFDAAFA 391
+++G F +R C ES VAEI RKVD V++G++VF L V GFDAAFA
Sbjct: 139 RVDGSFPRRCCRVVAPKAESGGEAAVVAEIRRKVDEGARVVMGRDVFVLRVGAGFDAAFA 198
Query: 390 MGFVLVLDHISGESFFDDDDDATAEPT 310
M VLVLD I+G D+ D E T
Sbjct: 199 MAIVLVLDQIAG----DEADGNAGEET 221
>gb|AAO13473.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 202
Score = 53.9 bits (128), Expect = 1e-06
Identities = 27/68 (39%), Positives = 43/68 (62%)
Frame = -2
Query: 552 QIEGCFSQRSCTFFNMMKESVAEIHRKVDPTTGVMLGKEVFSLSVKPGFDAAFAMGFVLV 373
++ G FSQR+CT + VA+I K G++ GK+ + + V+PG+D AF +G + +
Sbjct: 137 EVIGSFSQRACTVRSRAGHVVAQIGVK-----GMLAGKDFYHVVVQPGYDQAFVVGVIAI 191
Query: 372 LDHISGES 349
LD+I GES
Sbjct: 192 LDNIHGES 199
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 476,374,025
Number of Sequences: 1393205
Number of extensions: 9890670
Number of successful extensions: 32779
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 25390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30228
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
