Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012747A_C01 KMC012747A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_030274.1| expressed protein; protein id: At2g37240.1, sup... 160 1e-38
pir||C84790 hypothetical protein At2g37240 [imported] - Arabidop... 125 3e-28
ref|NP_201385.2| unknown protein; protein id: At5g65840.1, suppo... 42 0.004
gb|AAO38464.1| hypothetical protein [Oryza sativa (japonica cult... 36 0.27
gb|AAO38466.1| unknown protein [Oryza sativa (japonica cultivar-... 36 0.27
>ref|NP_030274.1| expressed protein; protein id: At2g37240.1, supported by cDNA:
98881., supported by cDNA: gi_15215633 [Arabidopsis
thaliana] gi|15215634|gb|AAK91362.1| At2g37240/F3G5.3
[Arabidopsis thaliana] gi|20197473|gb|AAC98045.2|
expressed protein [Arabidopsis thaliana]
gi|21618147|gb|AAM67197.1| unknown [Arabidopsis
thaliana]
Length = 248
Score = 160 bits (404), Expect = 1e-38
Identities = 71/94 (75%), Positives = 82/94 (86%)
Frame = -1
Query: 552 ADPTHSSYEPLNFVSGVLTTFTPNAGLKIIQLYMEGYRQDWKLSFEKDTVSRGGWKQGGI 373
ADP H+SYE L FVSGV TFTP A +KI++ YMEGYRQDWKLSF KDTV RGGW+QGGI
Sbjct: 155 ADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYRQDWKLSFMKDTVERGGWQQGGI 214
Query: 372 IVAGPGKNNISYLHKDKEAGDDPEIEDILKACCS 271
+VAGPGK+NISY+ KDKEAGDDP +E+ILKACC+
Sbjct: 215 LVAGPGKDNISYIRKDKEAGDDPPVEEILKACCA 248
>pir||C84790 hypothetical protein At2g37240 [imported] - Arabidopsis thaliana
Length = 234
Score = 125 bits (314), Expect = 3e-28
Identities = 56/75 (74%), Positives = 64/75 (84%)
Frame = -1
Query: 552 ADPTHSSYEPLNFVSGVLTTFTPNAGLKIIQLYMEGYRQDWKLSFEKDTVSRGGWKQGGI 373
ADP H+SYE L FVSGV TFTP A +KI++ YMEGYRQDWKLSF KDTV RGGW+QGGI
Sbjct: 155 ADPNHASYEALEFVSGVSVTFTPKAAMKILESYMEGYRQDWKLSFMKDTVERGGWQQGGI 214
Query: 372 IVAGPGKNNISYLHK 328
+VAGPGK+NISY+ K
Sbjct: 215 LVAGPGKDNISYIRK 229
>ref|NP_201385.2| unknown protein; protein id: At5g65840.1, supported by cDNA:
gi_20466749 [Arabidopsis thaliana]
gi|20466750|gb|AAM20692.1| unknown protein [Arabidopsis
thaliana] gi|23198250|gb|AAN15652.1| unknown protein
[Arabidopsis thaliana]
Length = 275
Score = 42.4 bits (98), Expect = 0.004
Identities = 26/93 (27%), Positives = 38/93 (39%)
Frame = -1
Query: 552 ADPTHSSYEPLNFVSGVLTTFTPNAGLKIIQLYMEGYRQDWKLSFEKDTVSRGGWKQGGI 373
ADP +Y+ L G+ TF A K+ + E + E R Q G
Sbjct: 179 ADPERKAYDVLGLYFGLGRTFFNPASTKVFSRFSEIREATKNYTIEATPEDRSSVLQQGG 238
Query: 372 IVAGPGKNNISYLHKDKEAGDDPEIEDILKACC 274
GK + Y KD+ GD P ++D++ CC
Sbjct: 239 TFVFRGKK-LLYGRKDEGTGDHPSLDDVINVCC 270
>gb|AAO38464.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 258
Score = 36.2 bits (82), Expect = 0.27
Identities = 25/93 (26%), Positives = 36/93 (37%)
Frame = -1
Query: 552 ADPTHSSYEPLNFVSGVLTTFTPNAGLKIIQLYMEGYRQDWKLSFEKDTVSRGGWKQGGI 373
ADP +Y+ L G+ TF A + + + E R Q G
Sbjct: 162 ADPERKAYDLLGLYFGIGRTFFNPASASVFSRFDSLKEAVKNYTIEATPDDRASVLQQGG 221
Query: 372 IVAGPGKNNISYLHKDKEAGDDPEIEDILKACC 274
+ GK I Y KD+ GD ++D+L CC
Sbjct: 222 MFVFRGKELI-YARKDEGTGDHAPLDDVLNICC 253
>gb|AAO38466.1| unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 259
Score = 36.2 bits (82), Expect = 0.27
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
Frame = -1
Query: 552 ADPTHSSYEPLNFVSGVLTTFTPNA----GLKIIQLYMEGYRQDWKLSFEKDTVS--RGG 391
ADP +Y+ L G+ T A GL I+ + Y K T + G
Sbjct: 166 ADPERKAYDVLGLYHGLGRTLISPAKMYSGLNSIKKVTKNYTL-------KGTPADLTGI 218
Query: 390 WKQGGIIVAGPGKNNISYLHKDKEAGDDPEIEDILKACCS 271
+QGG++V GK + Y KDK GD ++D+L ACC+
Sbjct: 219 LQQGGMLVFR-GKE-LLYSWKDKGTGDHAPLDDVLNACCN 256
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,329,745
Number of Sequences: 1393205
Number of extensions: 9246137
Number of successful extensions: 20261
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 19821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20252
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
