Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012686A_C01 KMC012686A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193040.1| hypothetical protein; protein id: At4g13040.1 [... 119 3e-26
pir||T03981 APETALA2-like protein Glossy15 - maize gi|1732031|gb... 39 0.034
gb|AAL73479.1|AF451865_5 endonuclease [Tetrahymena thermophila] 37 0.17
gb|AAL73476.1|AF451865_2 endonuclease [Tetrahymena thermophila] 36 0.29
gb|AAB57700.1| GLOSSY15 [Zea mays] 35 0.49
>ref|NP_193040.1| hypothetical protein; protein id: At4g13040.1 [Arabidopsis
thaliana] gi|7486123|pir||T10206 hypothetical protein
F25G13.130 - Arabidopsis thaliana
gi|5123945|emb|CAB45503.1| hypothetical protein
[Arabidopsis thaliana] gi|7268006|emb|CAB78346.1|
hypothetical protein [Arabidopsis thaliana]
gi|22136610|gb|AAM91624.1| unknown protein [Arabidopsis
thaliana]
Length = 196
Score = 119 bits (298), Expect = 3e-26
Identities = 58/79 (73%), Positives = 64/79 (80%)
Frame = -1
Query: 563 KNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFELPEEEKRELHKFKWD 384
KNMKWQAAIKV+KKQIHLGT SQEEAA LYDRAAFMCGREPNFEL EE REL + W+
Sbjct: 93 KNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFELSEEVIRELKQQSWE 152
Query: 383 EFLAVTRQAITRKKHRRRL 327
EFL TR+ IT KK + R+
Sbjct: 153 EFLNCTRRTITNKKPKSRI 171
>pir||T03981 APETALA2-like protein Glossy15 - maize gi|1732031|gb|AAC49567.1|
AP2 DNA-binding domain protein
Length = 446
Score = 39.3 bits (90), Expect = 0.034
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Frame = -1
Query: 554 KWQAAIK--VDKKQIHLGTVGSQEEAAHLYDRAAFMC-GRE--PNFELPEEEKRELHKFK 390
KW+A I + KK ++LG ++ EAA YD+AA C G+E NF+ +K EL
Sbjct: 216 KWEARIGQLMGKKYVYLGLYDTETEAAQAYDKAAIKCYGKEAVTNFDAQSYDK-ELQSQP 274
Query: 389 WD 384
WD
Sbjct: 275 WD 276
Score = 32.0 bits (71), Expect = 5.4
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = -1
Query: 554 KWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFM---CGREPNFELPE--EEKRELHKFK 390
+W++ I KQ++LG + + AA YD+AA + NF L + +E +++
Sbjct: 125 RWESHIWDCGKQVYLGGFDTAQAAARAYDQAAIKFRGLNADINFTLDDYKDEMKKMKDLS 184
Query: 389 WDEFLAVTRQ 360
+EF+ V R+
Sbjct: 185 KEEFVLVLRR 194
>gb|AAL73479.1|AF451865_5 endonuclease [Tetrahymena thermophila]
Length = 189
Score = 37.0 bits (84), Expect = 0.17
Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1
Query: 554 KWQAAIKVDKKQIHLGTVGSQEEAAHLYD-RAAFMCGREPNFELPEEEKRE 405
KW+A IK D K IHLG +E+AA YD +A G P E+ +E
Sbjct: 126 KWRAYIKKDWKLIHLGLFVDEEDAARAYDCKAIEHFGEFAKINFPREDYQE 176
>gb|AAL73476.1|AF451865_2 endonuclease [Tetrahymena thermophila]
Length = 181
Score = 36.2 bits (82), Expect = 0.29
Identities = 17/38 (44%), Positives = 23/38 (59%)
Frame = -1
Query: 554 KWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGRE 441
KWQA I +KK+ HLG +++EAA Y+ A RE
Sbjct: 135 KWQAYINFEKKRFHLGYFQTEKEAAQKYNEYALKYHRE 172
>gb|AAB57700.1| GLOSSY15 [Zea mays]
Length = 139
Score = 35.4 bits (80), Expect = 0.49
Identities = 21/53 (39%), Positives = 31/53 (57%), Gaps = 5/53 (9%)
Frame = -1
Query: 554 KWQAAIK--VDKKQIHLGTVGSQEEAAHLYDRAAFMC-GRE--PNFELPEEEK 411
KW+A I + KK ++LG ++ EAA YD+AA C G+E NF+ +K
Sbjct: 85 KWEARIGQLMGKKYVYLGLYDTETEAAQAYDKAAIKCYGKEAVTNFDAQSYDK 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,187,172
Number of Sequences: 1393205
Number of extensions: 11278993
Number of successful extensions: 27637
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 26895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27632
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
