Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012660A_C01 KMC012660A_c01
(637 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera] 106 2e-22
gb|AAL66734.1|AF460219_1 nuclear transcription factor SLN1 [Hord... 93 4e-20
gb|AAL10307.1| DWARF8 [Zea mays subsp. mays] 93 5e-20
emb|CAB51557.1| gibberellin response modulator [Zea mays] 92 7e-20
gb|AAL10382.1| DWARF8 [Zea mays subsp. mays] 92 7e-20
>gb|AAM19210.1|AF378125_1 GAI-like protein 1 [Vitis vinifera]
Length = 590
Score = 106 bits (264), Expect(2) = 2e-22
Identities = 50/75 (66%), Positives = 63/75 (83%)
Frame = -3
Query: 359 CSSMPTGKAKMWEEEHGGAAGVDELLAALGYKVRSSDMADVAQKMEQLEMVMGIAQEDGI 180
CS+ PTGK KMW+ + AG+DELLA LGY V++SDMA+VAQK+EQLE V+ AQEDG+
Sbjct: 13 CSTSPTGKGKMWDADPQQDAGMDELLAVLGYNVKASDMAEVAQKLEQLEEVIVNAQEDGL 72
Query: 179 SHLASDTVHYDPTDL 135
SHLAS+TVHY+P+DL
Sbjct: 73 SHLASETVHYNPSDL 87
Score = 21.2 bits (43), Expect(2) = 2e-22
Identities = 7/15 (46%), Positives = 11/15 (72%)
Frame = -1
Query: 133 SAWVQTILTELNPPP 89
S W+ ++L+E NP P
Sbjct: 88 SNWLGSMLSEFNPTP 102
>gb|AAL66734.1|AF460219_1 nuclear transcription factor SLN1 [Hordeum vulgare]
Length = 618
Score = 93.2 bits (230), Expect(2) = 4e-20
Identities = 56/106 (52%), Positives = 71/106 (66%), Gaps = 4/106 (3%)
Frame = -3
Query: 440 MKRDHQDSCKGGNTGSVRNRVGAVKGECSSMPTGKAKMWEEEHGGAAGVDELLAALGYKV 261
MKR++QD GG +G + +G+ + K + E G VDELLAALGYKV
Sbjct: 1 MKREYQD---GGGSGGGGDEMGSSRD--------KMMVSSSEAGEGEEVDELLAALGYKV 49
Query: 260 RSSDMADVAQKMEQLEMVMGI---AQEDGI-SHLASDTVHYDPTDL 135
R+SDMADVAQK+EQLEM MG+ A +DG +HLA+DTVHY+PTDL
Sbjct: 50 RASDMADVAQKLEQLEMAMGMGGPAPDDGFATHLATDTVHYNPTDL 95
Score = 26.6 bits (57), Expect(2) = 4e-20
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1
Query: 133 SAWVQTILTELNPPP 89
S+WV+++L+ELN PP
Sbjct: 96 SSWVESMLSELNAPP 110
>gb|AAL10307.1| DWARF8 [Zea mays subsp. mays]
Length = 579
Score = 92.8 bits (229), Expect(2) = 5e-20
Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 9/111 (8%)
Frame = -3
Query: 440 MKRDHQDSCKGGNTGSVRNRVGAVKGECSSMPTGKAKMWEEEHGGAAGVDELLAALGYKV 261
MKR++QD+ GG+ G + G+ K + + G + EE+ VDELLAALGYKV
Sbjct: 1 MKREYQDA--GGSDGDM----GSSKDKMMAAAAGAGEQEEED------VDELLAALGYKV 48
Query: 260 RSSDMADVAQKMEQLEMVMGI---------AQEDGISHLASDTVHYDPTDL 135
RSSDMADVAQK+EQLEM MG+ A + +SHLA+DTVHY+P+DL
Sbjct: 49 RSSDMADVAQKLEQLEMAMGMGGVGGAGATADDGFVSHLATDTVHYNPSDL 99
Score = 26.6 bits (57), Expect(2) = 5e-20
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1
Query: 133 SAWVQTILTELNPPP 89
S+WV+++L+ELN PP
Sbjct: 100 SSWVESMLSELNAPP 114
>emb|CAB51557.1| gibberellin response modulator [Zea mays]
Length = 630
Score = 92.4 bits (228), Expect(2) = 7e-20
Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 9/111 (8%)
Frame = -3
Query: 440 MKRDHQDSCKGGNTGSVRNRVGAVKGECSSMPTGKAKMWEEEHGGAAGVDELLAALGYKV 261
MKR++QD+ GG+ G + G+ K + + G + EE+ VDELLAALGYKV
Sbjct: 1 MKREYQDA--GGSGGDM----GSSKDKMMAAAAGAGEQEEED------VDELLAALGYKV 48
Query: 260 RSSDMADVAQKMEQLEMVMGI---------AQEDGISHLASDTVHYDPTDL 135
RSSDMADVAQK+EQLEM MG+ A + +SHLA+DTVHY+P+DL
Sbjct: 49 RSSDMADVAQKLEQLEMAMGMGGVGGAGATADDGFVSHLATDTVHYNPSDL 99
Score = 26.6 bits (57), Expect(2) = 7e-20
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1
Query: 133 SAWVQTILTELNPPP 89
S+WV+++L+ELN PP
Sbjct: 100 SSWVESMLSELNAPP 114
>gb|AAL10382.1| DWARF8 [Zea mays subsp. mays]
Length = 581
Score = 92.4 bits (228), Expect(2) = 7e-20
Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 9/111 (8%)
Frame = -3
Query: 440 MKRDHQDSCKGGNTGSVRNRVGAVKGECSSMPTGKAKMWEEEHGGAAGVDELLAALGYKV 261
MKR++QD+ GG+ G + G+ K + + G + EE+ VDELLAALGYKV
Sbjct: 1 MKREYQDA--GGSGGDM----GSSKDKMMAAAAGAGEQEEED------VDELLAALGYKV 48
Query: 260 RSSDMADVAQKMEQLEMVMGI---------AQEDGISHLASDTVHYDPTDL 135
RSSDMADVAQK+EQLEM MG+ A + +SHLA+DTVHY+P+DL
Sbjct: 49 RSSDMADVAQKLEQLEMAMGMGGVGGAGATADDGFVSHLATDTVHYNPSDL 99
Score = 26.6 bits (57), Expect(2) = 7e-20
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = -1
Query: 133 SAWVQTILTELNPPP 89
S+WV+++L+ELN PP
Sbjct: 100 SSWVESMLSELNAPP 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 639,506,384
Number of Sequences: 1393205
Number of extensions: 15737337
Number of successful extensions: 59159
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 51486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58695
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
