Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012575A_C01 KMC012575A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190996.1| TATA box binding protein (TBP) associated facto... 58 7e-08
gb|EAA01172.1| ebiP8413 [Anopheles gambiae str. PEST] 38 0.054
gb|AAH29930.1| Similar to BTAF1 RNA polymerase II, B-TFIID trans... 37 0.092
ref|XP_051720.3| similar to TBP-associated factor 172 (TAF-172) ... 37 0.092
ref|NP_015243.1| involved in TBP (TATA-binding protein) regulati... 37 0.16
>ref|NP_190996.1| TATA box binding protein (TBP) associated factor (TAF) -like protein;
protein id: At3g54280.1 [Arabidopsis thaliana]
gi|11358873|pir||T47587 TATA box binding protein (TBP)
associated factor (TAF)-like protein - Arabidopsis
thaliana gi|6822074|emb|CAB71002.1| TATA box binding
protein (TBP) associated factor (TAF)-like protein
[Arabidopsis thaliana]
Length = 2049
Score = 57.8 bits (138), Expect = 7e-08
Identities = 26/31 (83%), Positives = 28/31 (89%)
Frame = -3
Query: 494 KAILGGLEDLWDQSQYTEEYXLNQFLAKLNG 402
KAILG LE+LWDQSQYTEEY L+QFL KLNG
Sbjct: 2019 KAILGNLEELWDQSQYTEEYNLSQFLTKLNG 2049
>gb|EAA01172.1| ebiP8413 [Anopheles gambiae str. PEST]
Length = 1920
Score = 38.1 bits (87), Expect = 0.054
Identities = 17/29 (58%), Positives = 20/29 (68%)
Frame = -3
Query: 494 KAILGGLEDLWDQSQYTEEYXLNQFLAKL 408
K +L L +LWD SQY EEY L+QFL L
Sbjct: 1891 KTVLENLPELWDDSQYHEEYDLSQFLEGL 1919
>gb|AAH29930.1| Similar to BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, 170 kD (Mot1 homolog, S. cerevisiae)
[Homo sapiens]
Length = 680
Score = 37.4 bits (85), Expect = 0.092
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = -3
Query: 494 KAILGGLEDLWDQSQYTEEYXLNQFLAKL 408
K+IL L DLWDQ QY EY L F+ L
Sbjct: 651 KSILENLSDLWDQEQYDSEYSLENFMHSL 679
>ref|XP_051720.3| similar to TBP-associated factor 172 (TAF-172) (TAF(II)170) [Homo
sapiens] gi|27477070|ref|NP_003963.1| BTAF1 RNA
polymerase II, B-TFIID transcription factor-associated,
170kDa; TBP-associated factor 172; Mot1 homolog [Homo
sapiens] gi|12643543|sp|O14981|T172_HUMAN TBP-associated
factor 172 (TAF-172) (TAF(II)170)
gi|2920587|gb|AAC04573.1| TBP-associated factor 172 [Homo
sapiens] gi|2995136|emb|CAA04475.1| TBP associated factor
[Homo sapiens]
Length = 1849
Score = 37.4 bits (85), Expect = 0.092
Identities = 16/29 (55%), Positives = 18/29 (61%)
Frame = -3
Query: 494 KAILGGLEDLWDQSQYTEEYXLNQFLAKL 408
K+IL L DLWDQ QY EY L F+ L
Sbjct: 1820 KSILENLSDLWDQEQYDSEYSLENFMHSL 1848
>ref|NP_015243.1| involved in TBP (TATA-binding protein) regulation; Mot1p
[Saccharomyces cerevisiae] gi|417308|sp|P32333|MOT1_YEAST
Probable helicase MOT1 gi|283205|pir||S22775 MOT1 protein
- yeast (Saccharomyces cerevisiae)
gi|171965|gb|AAA34786.1| Mot1 gi|1147612|gb|AAB68257.1|
LPF4c; Mot1p is a probable helicase essential for
vegetative growth on rich glucose medium at 30 degree C:
Swiss-Prot Accession number P32333; similar to S.
cerevisiae RAD26 gene product: Swiss-Prot Accession
number P40352
Length = 1867
Score = 36.6 bits (83), Expect = 0.16
Identities = 16/29 (55%), Positives = 20/29 (68%)
Frame = -3
Query: 494 KAILGGLEDLWDQSQYTEEYXLNQFLAKL 408
K LG L++LWD SQY EEY L+ F+ L
Sbjct: 1838 KEALGELKELWDPSQYEEEYNLDTFIKTL 1866
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,616,284
Number of Sequences: 1393205
Number of extensions: 8882534
Number of successful extensions: 21560
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 20902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21550
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
