Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012534A_C01 KMC012534A_c01
(475 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus] ... 135 2e-31
ref|NP_084785.1| NADH dehydrogenase subunit J [Lotus japonicus] ... 93 2e-18
ref|NP_054939.1| NADH dehydrogenase subunit J [Spinacia oleracea... 93 2e-18
ref|NP_084667.1| NADH dehydrogenase subunit J [Oenothera elata s... 91 5e-18
ref|NP_054502.1| NADH dehydrogenase subunit J [Nicotiana tabacum... 91 6e-18
>ref|NP_084784.1| NADH dehydrogenase subunit K [Lotus japonicus]
gi|18202728|sp|Q9BBT7|NUKC_LOTJA NAD(P)H-quinone
oxidoreductase chain K, chloroplast (NAD(P)H
dehydrogenase, chain K) (NADH-plastoquinone
oxidoreductase subunit K) gi|13358965|dbj|BAB33182.1|
photosystem II G protein [Lotus japonicus]
Length = 230
Score = 135 bits (341), Expect = 2e-31
Identities = 63/63 (100%), Positives = 63/63 (100%)
Frame = +2
Query: 14 SLSSQRENRCFTTNHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNE 193
SLSSQRENRCFTTNHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNE
Sbjct: 168 SLSSQRENRCFTTNHKFYVERSTHTGNYDQVLFHQPPSTSEISSDTFFRYQKVQYPPRNE 227
Query: 194 IVN 202
IVN
Sbjct: 228 IVN 230
>ref|NP_084785.1| NADH dehydrogenase subunit J [Lotus japonicus]
gi|23821910|sp|Q9BBT6|NUGC_LOTJA NAD(P)H-quinone
oxidoreductase chain J, chloroplast (NAD(P)H
dehydrogenase, chain J) (NADH-plastoquinone
oxidoreductase subunit J) gi|13358966|dbj|BAB33183.1|
NADH dehydrogenase subunit [Lotus japonicus]
Length = 158
Score = 92.8 bits (229), Expect = 2e-18
Identities = 42/44 (95%), Positives = 44/44 (99%)
Frame = +3
Query: 342 VQGRVSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY 473
+QGR+SAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY
Sbjct: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY 44
>ref|NP_054939.1| NADH dehydrogenase subunit J [Spinacia oleracea]
gi|18203266|sp|Q9M3M1|NUGC_SPIOL NAD(P)H-quinone
oxidoreductase chain J, chloroplast (NAD(P)H
dehydrogenase, chain J) (NADH-plastoquinone
oxidoreductase subunit J) gi|7636112|emb|CAB88732.1|
NADH dehydrogenase 19kDa subunit [Spinacia oleracea]
Length = 158
Score = 92.8 bits (229), Expect = 2e-18
Identities = 42/44 (95%), Positives = 44/44 (99%)
Frame = +3
Query: 342 VQGRVSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY 473
+QGR+SAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY
Sbjct: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY 44
>ref|NP_084667.1| NADH dehydrogenase subunit J [Oenothera elata subsp. hookeri]
gi|22256941|sp|Q9MTP3|NUGC_OENHO NAD(P)H-quinone
oxidoreductase chain J, chloroplast (NAD(P)H
dehydrogenase, chain J) (NADH-plastoquinone
oxidoreductase subunit J) gi|6723723|emb|CAB67132.1|
NADH-plastoquinone oxidoreductase subunit J [Oenothera
elata subsp. hookeri]
Length = 158
Score = 91.3 bits (225), Expect = 5e-18
Identities = 41/44 (93%), Positives = 44/44 (99%)
Frame = +3
Query: 342 VQGRVSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY 473
+QGR+SAWLVKHGLVHRSLGFDYQGIETLQIKPE+WHSIAVILY
Sbjct: 1 MQGRLSAWLVKHGLVHRSLGFDYQGIETLQIKPEEWHSIAVILY 44
>ref|NP_054502.1| NADH dehydrogenase subunit J [Nicotiana tabacum]
gi|28261720|ref|NP_783235.1| NADH dehydrogenase 19kD
subunit [Atropa belladonna]
gi|128859|sp|P12201|NUGC_TOBAC NAD(P)H-quinone
oxidoreductase chain J, chloroplast (NAD(P)H
dehydrogenase, chain J) (NADH-plastoquinone
oxidoreductase subunit J) gi|82206|pir||A05194
hypothetical protein 158 - common tobacco chloroplast
gi|11836|emb|CAA77356.1| NADH dehydrogenase 30kD subunit
[Nicotiana tabacum] gi|20068334|emb|CAC88047.1| NADH
dehydrogenase 19kD subunit [Atropa belladonna]
gi|225204|prf||1211235AJ ORF 158
Length = 158
Score = 90.9 bits (224), Expect = 6e-18
Identities = 40/44 (90%), Positives = 43/44 (96%)
Frame = +3
Query: 342 VQGRVSAWLVKHGLVHRSLGFDYQGIETLQIKPEDWHSIAVILY 473
+QGR+SAWLVKHGL+HRSLGFDYQGIETLQIKPEDWHSIAVI Y
Sbjct: 1 MQGRLSAWLVKHGLIHRSLGFDYQGIETLQIKPEDWHSIAVIFY 44
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,276,523
Number of Sequences: 1393205
Number of extensions: 7411860
Number of successful extensions: 16895
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 16291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16880
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12815311608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
