Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012532A_C01 KMC012532A_c01
(636 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201127.1| putative protein; protein id: At5g63220.1 [Arab... 113 2e-24
dbj|BAB64791.1| P0701D05.5 [Oryza sativa (japonica cultivar-grou... 97 2e-19
ref|XP_213726.1| similar to expressed sequence AW412535 [Mus mus... 42 0.005
ref|NP_080545.2| RIKEN cDNA 1110007L15 [Mus musculus] gi|2638580... 42 0.005
ref|XP_132453.1| expressed sequence AW412535 [Mus musculus] gi|1... 42 0.005
>ref|NP_201127.1| putative protein; protein id: At5g63220.1 [Arabidopsis thaliana]
gi|10177303|dbj|BAB10564.1|
gene_id:MDC12.19~ref|NP_057033.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 316
Score = 113 bits (283), Expect = 2e-24
Identities = 54/85 (63%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Frame = -3
Query: 634 EEIKKQIESTKVELPQTDLMQFIVYLLQTMERDAFPLFNMLRGNYKSCIEREPAFNEMLD 455
+EIKKQ E+ EL ++DL+QFI YLL+T++RDA PLFNMLR YKS I+R+ NE+LD
Sbjct: 231 DEIKKQAETKNPELSESDLIQFISYLLETLQRDALPLFNMLRVKYKSSIDRDQLLNELLD 290
Query: 454 DIAEKFFGVQRRNPM-GMFGDIFKM 383
+IAE+F+GVQR+NP+ GMFGDIFK+
Sbjct: 291 EIAERFYGVQRKNPLQGMFGDIFKV 315
>dbj|BAB64791.1| P0701D05.5 [Oryza sativa (japonica cultivar-group)]
gi|21327993|dbj|BAC00582.1| B1189A09.36 [Oryza sativa
(japonica cultivar-group)]
Length = 362
Score = 96.7 bits (239), Expect = 2e-19
Identities = 42/84 (50%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Frame = -3
Query: 634 EEIKKQIESTKVELPQTDLMQFIVYLLQTMERDAFPLFNMLRGNYKSCIEREPAFNEMLD 455
+E+K Q++S +E+P+TDL+QFI YLL T+ERDA+PLF LR YK+ + +P F E+LD
Sbjct: 246 DELKDQLKSADLEIPKTDLIQFIKYLLPTLERDAYPLFRTLRQKYKTSTDHDPVFEELLD 305
Query: 454 DIAEKFFGVQRRNPM-GMFGDIFK 386
+IA KF+G++ ++ + G+FGD+F+
Sbjct: 306 EIAAKFYGIRSQSALEGLFGDMFR 329
>ref|XP_213726.1| similar to expressed sequence AW412535 [Mus musculus] [Rattus
norvegicus]
Length = 150
Score = 42.4 bits (98), Expect = 0.005
Identities = 24/73 (32%), Positives = 41/73 (55%), Gaps = 4/73 (5%)
Frame = -3
Query: 580 LMQFIVYLLQTMERDAFPLFNMLRGNYKSCIEREPAFNEMLDDIAEKFFGV---QRRNPM 410
L+ FI +LL ++ +F +L Y+ + R+P +NE LD I + FFGV Q +
Sbjct: 59 LLNFIWFLLLAVDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTSSYG 118
Query: 409 GMFGDIF-KMMGA 374
G+ G++ +MG+
Sbjct: 119 GLLGNLLSSLMGS 131
>ref|NP_080545.2| RIKEN cDNA 1110007L15 [Mus musculus] gi|26385805|dbj|BAB22851.2|
unnamed protein product [Mus musculus]
Length = 327
Score = 42.4 bits (98), Expect = 0.005
Identities = 24/73 (32%), Positives = 41/73 (55%), Gaps = 4/73 (5%)
Frame = -3
Query: 580 LMQFIVYLLQTMERDAFPLFNMLRGNYKSCIEREPAFNEMLDDIAEKFFGV---QRRNPM 410
L+ FI +LL ++ +F +L Y+ + R+P +NE LD I + FFGV Q +
Sbjct: 236 LLNFIWFLLLAVDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTSSYG 295
Query: 409 GMFGDIF-KMMGA 374
G+ G++ +MG+
Sbjct: 296 GLLGNLLSSLMGS 308
>ref|XP_132453.1| expressed sequence AW412535 [Mus musculus]
gi|18043415|gb|AAH19557.1| RIKEN cDNA 1110007L15 gene
[Mus musculus]
Length = 274
Score = 42.4 bits (98), Expect = 0.005
Identities = 24/73 (32%), Positives = 41/73 (55%), Gaps = 4/73 (5%)
Frame = -3
Query: 580 LMQFIVYLLQTMERDAFPLFNMLRGNYKSCIEREPAFNEMLDDIAEKFFGV---QRRNPM 410
L+ FI +LL ++ +F +L Y+ + R+P +NE LD I + FFGV Q +
Sbjct: 183 LLNFIWFLLLAVDGGKLAVFTVLCEQYQPSLRRDPMYNEYLDRIGQLFFGVPPKQTSSYG 242
Query: 409 GMFGDIF-KMMGA 374
G+ G++ +MG+
Sbjct: 243 GLLGNLLSSLMGS 255
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,126,743
Number of Sequences: 1393205
Number of extensions: 9909835
Number of successful extensions: 21799
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21790
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
