Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012516A_C01 KMC012516A_c01
(628 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568697.1| expressed protein; protein id: At5g48470.1, sup... 158 5e-38
gb|AAM63468.1| unknown [Arabidopsis thaliana] 156 2e-37
dbj|BAA96967.1| gene_id:MJE7.11~unknown protein [Arabidopsis tha... 140 1e-32
ref|NP_498546.1| 7 transmembrane receptor, rhodopsin-type family... 34 1.4
>ref|NP_568697.1| expressed protein; protein id: At5g48470.1, supported by cDNA:
25275. [Arabidopsis thaliana]
Length = 397
Score = 158 bits (400), Expect = 5e-38
Identities = 79/108 (73%), Positives = 87/108 (80%)
Frame = -1
Query: 628 NFLTKLVALKPGKVVLGMIRNVMQGKDEGADNSGRSDEDDTTHRVTSGIAGRASVTGRKP 449
NFL KLVALKPGK V MI+NVMQGKDEGADN + D+ T R SG+ GR SVTGRKP
Sbjct: 290 NFLAKLVALKPGKTVQQMIQNVMQGKDEGADNLSKEDDSSTEGRKPSGLNGRGSVTGRKP 349
Query: 448 HPVRPGMFLETVSKVLSGIYAGNDSGITAQHLEWVHPKTLPVLQEIAF 305
PVRPGMFLETV+KVL IY+GN SGITAQHLEWVH KTL VL+EIA+
Sbjct: 350 LPVRPGMFLETVTKVLGSIYSGNASGITAQHLEWVHQKTLQVLEEIAY 397
>gb|AAM63468.1| unknown [Arabidopsis thaliana]
Length = 397
Score = 156 bits (395), Expect = 2e-37
Identities = 78/108 (72%), Positives = 86/108 (79%)
Frame = -1
Query: 628 NFLTKLVALKPGKVVLGMIRNVMQGKDEGADNSGRSDEDDTTHRVTSGIAGRASVTGRKP 449
NFL KLVALKPGK V MI+NVMQGKDEGADN + + T R SG+ GR SVTGRKP
Sbjct: 290 NFLAKLVALKPGKTVQQMIQNVMQGKDEGADNLSKESDSSTEGRKPSGLKGRGSVTGRKP 349
Query: 448 HPVRPGMFLETVSKVLSGIYAGNDSGITAQHLEWVHPKTLPVLQEIAF 305
PVRPGMFLETV+KVL IY+GN SGITAQHLEWVH KTL VL+EIA+
Sbjct: 350 LPVRPGMFLETVTKVLGSIYSGNASGITAQHLEWVHQKTLQVLEEIAY 397
>dbj|BAA96967.1| gene_id:MJE7.11~unknown protein [Arabidopsis thaliana]
Length = 364
Score = 140 bits (354), Expect = 1e-32
Identities = 70/95 (73%), Positives = 76/95 (79%)
Frame = -1
Query: 628 NFLTKLVALKPGKVVLGMIRNVMQGKDEGADNSGRSDEDDTTHRVTSGIAGRASVTGRKP 449
NFL KLVALKPGK V MI+NVMQGKDEGADN + D+ T R SG+ GR SVTGRKP
Sbjct: 267 NFLAKLVALKPGKTVQQMIQNVMQGKDEGADNLSKEDDSSTEGRKPSGLNGRGSVTGRKP 326
Query: 448 HPVRPGMFLETVSKVLSGIYAGNDSGITAQHLEWV 344
PVRPGMFLETV+KVL IY+GN SGITAQHLEWV
Sbjct: 327 LPVRPGMFLETVTKVLGSIYSGNASGITAQHLEWV 361
>ref|NP_498546.1| 7 transmembrane receptor, rhodopsin-type family member family
member [Caenorhabditis elegans] gi|7511139|pir||T27853
hypothetical protein ZK418.7 - Caenorhabditis elegans
gi|470375|gb|AAA50691.1| Hypothetical protein ZK418.7
[Caenorhabditis elegans]
Length = 399
Score = 34.3 bits (77), Expect = 1.4
Identities = 18/53 (33%), Positives = 29/53 (53%), Gaps = 2/53 (3%)
Frame = +3
Query: 420 SRNMPGRTGCGFRPVTLALPAIPLVTLCVVSSSSLR--PELSAPSSFPCITFL 572
S +M G +T A+ +IP++ +C+V+ ++LR L S PC TFL
Sbjct: 281 SNSMTAMKRLGLNMITFAIGSIPILIVCIVALANLRELSSLGEGSKGPCKTFL 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,818,862
Number of Sequences: 1393205
Number of extensions: 11765440
Number of successful extensions: 28764
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 27945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28758
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
