Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012509A_C01 KMC012509A_c01
(539 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568178.1| expressed protein; protein id: At5g07020.1, sup... 85 5e-16
gb|AAM62950.1| unknown [Arabidopsis thaliana] 84 1e-15
ref|XP_220903.1| similar to nuclear domain 10 protein [Homo sapi... 39 0.040
emb|CAD38908.1| hypothetical protein [Homo sapiens] 38 0.090
pir||T50624 hypothetical protein DKFZp762N1313.1 - human (fragment) 38 0.090
>ref|NP_568178.1| expressed protein; protein id: At5g07020.1, supported by cDNA:
17482., supported by cDNA: gi_15293030, supported by
cDNA: gi_20258892 [Arabidopsis thaliana]
gi|9759558|dbj|BAB11160.1| gene_id:MOJ9.19~unknown
protein [Arabidopsis thaliana]
gi|15293031|gb|AAK93626.1| unknown protein [Arabidopsis
thaliana] gi|20258893|gb|AAM14118.1| unknown protein
[Arabidopsis thaliana]
Length = 235
Score = 85.1 bits (209), Expect = 5e-16
Identities = 59/119 (49%), Positives = 71/119 (59%), Gaps = 14/119 (11%)
Frame = -3
Query: 537 NTAGIVAFLALISIAAASSILLQVGKTTPPIQRA-EYSGPSLSYYISKFKP--------P 385
NTA IVA +ALI++AAASSILLQVGK P +A +YSGPSLSYYI+KFKP P
Sbjct: 126 NTAAIVAGIALIAVAAASSILLQVGKDAPTRPKAVDYSGPSLSYYINKFKPSEIVQPSTP 185
Query: 384 EITQAPALIE-----PELPSSVVQPETAPEVSSSVAAESEIQPEVPEPVASA*KLSSTS 223
+T+AP + E PE PS Q + PE + SE QPE +S SSTS
Sbjct: 186 SVTEAPPVAELETSLPETPSVAQQETSLPETMA-----SEAQPE----ASSVPTTSSTS 235
>gb|AAM62950.1| unknown [Arabidopsis thaliana]
Length = 235
Score = 84.0 bits (206), Expect = 1e-15
Identities = 51/99 (51%), Positives = 60/99 (60%), Gaps = 9/99 (9%)
Frame = -3
Query: 537 NTAGIVAFLALISIAAASSILLQVGKTTPPIQRA-EYSGPSLSYYISKFKP--------P 385
NTA IVA +ALI++AAASSILLQVGK P +A +YSGPSLSYYI+KFKP P
Sbjct: 126 NTAAIVAGIALIAVAAASSILLQVGKDAPTRPKAVDYSGPSLSYYINKFKPSEIVQPSTP 185
Query: 384 EITQAPALIEPELPSSVVQPETAPEVSSSVAAESEIQPE 268
+T+AP + E E P E S SE QPE
Sbjct: 186 SVTEAPPVAELETSLPETPPVAQQETSLPETMASEAQPE 224
>ref|XP_220903.1| similar to nuclear domain 10 protein [Homo sapiens] [Rattus
norvegicus]
Length = 974
Score = 38.9 bits (89), Expect = 0.040
Identities = 22/48 (45%), Positives = 30/48 (61%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVAAESEIQPEVPEPVASA 244
PE+ A A EPE+PS+ Q + PEV S A+++ +PEVP P A A
Sbjct: 376 PEVPSAQADAEPEVPSA--QADAEPEVPS---AQADAEPEVPSPQADA 418
Score = 38.5 bits (88), Expect = 0.053
Identities = 23/55 (41%), Positives = 30/55 (53%), Gaps = 7/55 (12%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVAAESEI-------QPEVPEPVASA 244
PE+ A A EPE+PS+ Q + PE S+ AE E+ +PEVP P A A
Sbjct: 583 PEVPSAQADAEPEVPSA--QADAEPEAPSAQVAEPEVPSAQADAEPEVPSPQADA 635
Score = 35.4 bits (80), Expect(2) = 0.093
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVA--------AESEIQPEVPEPVASA 244
PE+ A A EPE+PS Q + PEV S A A+ + +PEVP P A A
Sbjct: 615 PEVPSAQADAEPEVPSP--QADAEPEVPSPQADAEPEVPPAQVDAEPEVPSPQADA 668
Score = 35.4 bits (80), Expect = 0.44
Identities = 24/55 (43%), Positives = 31/55 (55%), Gaps = 7/55 (12%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVA-AESEI------QPEVPEPVASA 244
PE+ A EPE+PS Q + PEV S+ A AE+E+ +PEVP P A A
Sbjct: 409 PEVPSPQADAEPEVPSP--QADAEPEVPSAQADAETEVPSQADAEPEVPSPQADA 461
Score = 34.7 bits (78), Expect = 0.76
Identities = 19/48 (39%), Positives = 27/48 (55%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVAAESEIQPEVPEPVASA 244
PE++ A EPE+PS Q + PEV S +++ +PEVP P A
Sbjct: 692 PEVSSPQAAAEPEVPSP--QADAEPEVPS---PQADAEPEVPSPQVDA 734
Score = 34.3 bits (77), Expect = 0.99
Identities = 19/48 (39%), Positives = 28/48 (57%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVAAESEIQPEVPEPVASA 244
PE+ A A EPE+PS+ Q + PE S A+++++PE P A A
Sbjct: 529 PEVPSAQADAEPEVPSA--QADAEPEAPS---AQADVEPEAPSAQADA 571
Score = 33.9 bits (76), Expect = 1.3
Identities = 24/56 (42%), Positives = 30/56 (52%), Gaps = 8/56 (14%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSS-SVAAESEI-------QPEVPEPVASA 244
PE+ A EPE+PS Q + PEVSS AAE E+ +PEV P A+A
Sbjct: 648 PEVPPAQVDAEPEVPSP--QADAEPEVSSPQAAAEPEVSSPQVDAEPEVSSPQAAA 701
Score = 33.5 bits (75), Expect = 1.7
Identities = 22/48 (45%), Positives = 27/48 (55%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSSSVAAESEIQPEVPEPVASA 244
PE A A EPE+PS V E PEV S A+++ +PEVP A A
Sbjct: 507 PEAPSAQADAEPEVPSPHVDAE--PEVPS---AQADAEPEVPSAQADA 549
Score = 31.6 bits (70), Expect = 6.4
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 16/64 (25%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSV--VQPE-------TAPEVSSSVAAESEI-------QPEVPEP 256
PE+ A A EPE PS+ V+PE PE S+ AE E+ +PEVP
Sbjct: 540 PEVPSAQADAEPEAPSAQADVEPEAPSAQADAEPEAPSAQVAEPEVPSAQADAEPEVPSA 599
Query: 255 VASA 244
A A
Sbjct: 600 QADA 603
Score = 31.6 bits (70), Expect = 6.4
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Frame = -3
Query: 387 PEITQAPALIEPELPSSVVQPETAPEVSS--------SVAAESEIQPEVPEPVASA 244
PE+ A A EPE+PS V E PEV S + +A+++ +PE P A A
Sbjct: 463 PEVPSAQADAEPEVPSPHVDAE--PEVPSPHIDAEPEAPSAQADAEPEAPSAQADA 516
Score = 21.2 bits (43), Expect(2) = 0.093
Identities = 9/17 (52%), Positives = 11/17 (63%)
Frame = -1
Query: 248 QPESSPPQVSSSVEVGS 198
+PE S PQV + EV S
Sbjct: 680 EPEVSSPQVDAEPEVSS 696
>emb|CAD38908.1| hypothetical protein [Homo sapiens]
Length = 504
Score = 37.7 bits (86), Expect = 0.090
Identities = 28/74 (37%), Positives = 35/74 (46%), Gaps = 1/74 (1%)
Frame = -3
Query: 477 LLQVGKTTPPIQRAEYSGPSLSYYISKFKPPEITQAPALIEPELPSSVVQPETA-PEVSS 301
LL G PP+ A S P S PPE +AP L PE P+S ++PE A P +S+
Sbjct: 278 LLPGGGAPPPLSEA--SSPLACLLQSLQIPPEQPEAPCL-PPESPASALEPEPARPPLSA 334
Query: 300 SVAAESEIQPEVPE 259
P VPE
Sbjct: 335 LAPPHGSPDPPVPE 348
>pir||T50624 hypothetical protein DKFZp762N1313.1 - human (fragment)
Length = 220
Score = 37.7 bits (86), Expect = 0.090
Identities = 28/74 (37%), Positives = 35/74 (46%), Gaps = 1/74 (1%)
Frame = -3
Query: 477 LLQVGKTTPPIQRAEYSGPSLSYYISKFKPPEITQAPALIEPELPSSVVQPETA-PEVSS 301
LL G PP+ A S P S PPE +AP L PE P+S ++PE A P +S+
Sbjct: 45 LLPGGGAPPPLSEA--SSPLACLLQSLQIPPEQPEAPCL-PPESPASALEPEPARPPLSA 101
Query: 300 SVAAESEIQPEVPE 259
P VPE
Sbjct: 102 LAPPHGSPDPPVPE 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,982,506
Number of Sequences: 1393205
Number of extensions: 8999757
Number of successful extensions: 33107
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 29515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32798
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
