Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012484A_C01 KMC012484A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P31656|CADH_MEDSA Cinnamyl-alcohol dehydrogenase (CAD) gi|322... 188 4e-47
gb|AAL34329.1|L46857_1 cinnamyl-alcohol dehydrogenase [Medicago ... 188 4e-47
gb|AAF43140.1|AF217957_1 cinnamyl alcohol dehydrogenase; CAD [Po... 174 6e-43
emb|CAC07423.1| cinnamyl alcohol dehydrogenase [Populus balsamif... 174 8e-43
sp|P31657|CADH_POPDE Cinnamyl-alcohol dehydrogenase (CAD) gi|743... 173 2e-42
>sp|P31656|CADH_MEDSA Cinnamyl-alcohol dehydrogenase (CAD) gi|322704|pir||S31572
cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) - alfalfa
gi|19595|emb|CAA79625.1| cinnamyl alcohol dehydrogenase
[Medicago sativa] gi|3603399|gb|AAC35845.1|
cinnamyl-alcohol dehydrogenase [Medicago sativa]
Length = 358
Score = 188 bits (478), Expect = 4e-47
Identities = 91/101 (90%), Positives = 98/101 (96%)
Frame = -3
Query: 599 VGHPLEPYLSLLKLDGKLILMGVIYTPLQFITPMVMLGRRSITGSFIGSIKETEEMVEFW 420
VGHPLEPYLSLLK+DGKLILMGVI TPLQF+TPMVMLGR+SITGSF+GS+KETEEM+EFW
Sbjct: 255 VGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFW 314
Query: 419 KEKGLTSMIEIVNMDYIHKPFERLEKNDVRYRFVVDVKGSK 297
KEKGLTSMIEIV MDYI+K FERLEKNDVRYRFVVDVKGSK
Sbjct: 315 KEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSK 355
>gb|AAL34329.1|L46857_1 cinnamyl-alcohol dehydrogenase [Medicago sativa]
Length = 335
Score = 188 bits (478), Expect = 4e-47
Identities = 91/101 (90%), Positives = 98/101 (96%)
Frame = -3
Query: 599 VGHPLEPYLSLLKLDGKLILMGVIYTPLQFITPMVMLGRRSITGSFIGSIKETEEMVEFW 420
VGHPLEPYLSLLK+DGKLILMGVI TPLQF+TPMVMLGR+SITGSF+GS+KETEEM+EFW
Sbjct: 232 VGHPLEPYLSLLKIDGKLILMGVINTPLQFVTPMVMLGRKSITGSFVGSVKETEEMLEFW 291
Query: 419 KEKGLTSMIEIVNMDYIHKPFERLEKNDVRYRFVVDVKGSK 297
KEKGLTSMIEIV MDYI+K FERLEKNDVRYRFVVDVKGSK
Sbjct: 292 KEKGLTSMIEIVTMDYINKAFERLEKNDVRYRFVVDVKGSK 332
>gb|AAF43140.1|AF217957_1 cinnamyl alcohol dehydrogenase; CAD [Populus tremuloides]
Length = 357
Score = 174 bits (442), Expect = 6e-43
Identities = 87/103 (84%), Positives = 95/103 (91%)
Frame = -3
Query: 599 VGHPLEPYLSLLKLDGKLILMGVIYTPLQFITPMVMLGRRSITGSFIGSIKETEEMVEFW 420
V HPLEPYLSLLKLDGKLILMGVI TPLQF++PMVMLGR+SITGSFIGS+KETEEM+EF
Sbjct: 254 VVHPLEPYLSLLKLDGKLILMGVINTPLQFVSPMVMLGRKSITGSFIGSMKETEEMLEFC 313
Query: 419 KEKGLTSMIEIVNMDYIHKPFERLEKNDVRYRFVVDVKGSKLI 291
KEKGL SMIE++ MDYI+ FERLEKNDVRYRFVVDV GSKLI
Sbjct: 314 KEKGLASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKLI 356
>emb|CAC07423.1| cinnamyl alcohol dehydrogenase [Populus balsamifera subsp.
trichocarpa]
Length = 357
Score = 174 bits (441), Expect = 8e-43
Identities = 87/103 (84%), Positives = 94/103 (90%)
Frame = -3
Query: 599 VGHPLEPYLSLLKLDGKLILMGVIYTPLQFITPMVMLGRRSITGSFIGSIKETEEMVEFW 420
V HPLEPYLSLLKLDGKLILMGVI PLQF+TPMVMLGR+SITGSFIGS+KETEEM+EF
Sbjct: 254 VVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFC 313
Query: 419 KEKGLTSMIEIVNMDYIHKPFERLEKNDVRYRFVVDVKGSKLI 291
KEKGL SMIE++ MDYI+ FERLEKNDVRYRFVVDV GSKLI
Sbjct: 314 KEKGLASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKLI 356
>sp|P31657|CADH_POPDE Cinnamyl-alcohol dehydrogenase (CAD) gi|7430943|pir||T09141
cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) -
cottonwood gi|288753|emb|CAA79622.1| cinnamyl alcohol
dehydrogenase [Populus deltoides]
Length = 357
Score = 173 bits (438), Expect = 2e-42
Identities = 86/103 (83%), Positives = 94/103 (90%)
Frame = -3
Query: 599 VGHPLEPYLSLLKLDGKLILMGVIYTPLQFITPMVMLGRRSITGSFIGSIKETEEMVEFW 420
V HPLEPYLSLLKLDGKLILMGVI PLQF+TPMVMLGR+SITGSFIGS+KETEEM+EF
Sbjct: 254 VVHPLEPYLSLLKLDGKLILMGVINAPLQFVTPMVMLGRKSITGSFIGSMKETEEMLEFC 313
Query: 419 KEKGLTSMIEIVNMDYIHKPFERLEKNDVRYRFVVDVKGSKLI 291
KEKG+ SMIE++ MDYI+ FERLEKNDVRYRFVVDV GSKLI
Sbjct: 314 KEKGVASMIEVIKMDYINTAFERLEKNDVRYRFVVDVAGSKLI 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,081,334
Number of Sequences: 1393205
Number of extensions: 10607361
Number of successful extensions: 31530
Number of sequences better than 10.0: 212
Number of HSP's better than 10.0 without gapping: 30789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31476
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
