Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012478A_C01 KMC012478A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC43845.1| urease [Glycine max] 50 2e-05
ref|NP_176922.1| putative urease; protein id: At1g67550.1 [Arabi... 50 3e-05
pir||S42592 urease (EC 3.5.1.5), tissue-ubiquitous - soybean (fr... 48 1e-04
gb|AAA83831.1| urease 48 1e-04
prf||1311327A urease 48 1e-04
>emb|CAC43845.1| urease [Glycine max]
Length = 837
Score = 50.4 bits (119), Expect = 2e-05
Identities = 26/43 (60%), Positives = 32/43 (73%)
Frame = +3
Query: 357 SVRKLTKLDMKLNDALPQINLDQETFTSTTNGGIEAVNSTAAE 485
+VRKLTK DMKLND LPQI +D ET+T T +G E + TAA+
Sbjct: 786 NVRKLTKRDMKLNDTLPQITVDPETYTVTADG--EVLTCTAAK 826
>ref|NP_176922.1| putative urease; protein id: At1g67550.1 [Arabidopsis thaliana]
gi|25290122|pir||A96699 probable urease F12B7.10
[imported] - Arabidopsis thaliana
gi|12324683|gb|AAG52306.1|AC011020_13 putative urease
[Arabidopsis thaliana]
Length = 838
Score = 50.1 bits (118), Expect = 3e-05
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +3
Query: 354 NSVRKLTKLDMKLNDALPQINLDQETFTSTTNGGI 458
++VR+LTKLDMKLNDALP+I +D ET+ T NG +
Sbjct: 786 SNVRQLTKLDMKLNDALPEITVDPETYVVTANGEV 820
>pir||S42592 urease (EC 3.5.1.5), tissue-ubiquitous - soybean (fragment)
gi|545763|gb|AAB30113.1| urease [Glycine max]
Length = 131
Score = 48.1 bits (113), Expect = 1e-04
Identities = 21/34 (61%), Positives = 28/34 (81%)
Frame = +3
Query: 357 SVRKLTKLDMKLNDALPQINLDQETFTSTTNGGI 458
+VRKLTKLDMKLND+LPQI +D + +T T +G +
Sbjct: 80 NVRKLTKLDMKLNDSLPQITVDPDNYTVTADGEV 113
>gb|AAA83831.1| urease
Length = 840
Score = 48.1 bits (113), Expect = 1e-04
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +3
Query: 354 NSVRKLTKLDMKLNDALPQINLDQETFTSTTNGGIEAVN 470
++VRKLTKLDMKLNDALP+I +D E++T +G + V+
Sbjct: 788 SNVRKLTKLDMKLNDALPEITVDPESYTVKADGKLLCVS 826
>prf||1311327A urease
Length = 840
Score = 48.1 bits (113), Expect = 1e-04
Identities = 22/39 (56%), Positives = 31/39 (79%)
Frame = +3
Query: 354 NSVRKLTKLDMKLNDALPQINLDQETFTSTTNGGIEAVN 470
++VRKLTKLDMKLNDALP+I +D E++T +G + V+
Sbjct: 788 SNVRKLTKLDMKLNDALPEITVDPESYTVKADGKLLCVS 826
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,664,071
Number of Sequences: 1393205
Number of extensions: 14256203
Number of successful extensions: 46075
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 43959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45986
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
