Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012476A_C01 KMC012476A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T12317 26S proteasome regulatory subunit S5A - common ice p... 296 1e-79
pir||T51606 probable 26S proteasome non-ATPase chain S5a [import... 281 6e-75
ref|NP_195575.1| 26S proteasome regulatory subunit S5A (RPN10); ... 275 4e-73
gb|AAM65985.1| multiubiquitin chain binding protein MBP1 [Arabid... 275 4e-73
gb|AAF74210.1|AF076610_1 multiubiquitin chain-binding protein [P... 260 1e-68
>pir||T12317 26S proteasome regulatory subunit S5A - common ice plant
gi|3202042|gb|AAC19402.1| 26S proteasome regulatory
subunit S5A [Mesembryanthemum crystallinum]
Length = 405
Score = 296 bits (759), Expect = 1e-79
Identities = 143/167 (85%), Positives = 161/167 (95%)
Frame = +1
Query: 91 MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVR 270
MVLEATMICIDNSEWMRNGDY +RFQAQADAVNLICGAKTQSNPENTVG+LTMAGKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYTANRFQAQADAVNLICGAKTQSNPENTVGILTMAGKGVR 60
Query: 271 VLVTPTSDLGKILACMHGLEMGGEMNLAAGIQVAQLALKHRQNKKQQQGMVVLAGSPVKH 450
VLVTPTSDLGKILACMHGL+MGGEMNLAAGIQ+AQLALKHRQNKKQQQ ++V AGSPVK+
Sbjct: 61 VLVTPTSDLGKILACMHGLDMGGEMNLAAGIQIAQLALKHRQNKKQQQRIIVFAGSPVKY 120
Query: 451 EKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAXVNNNDS 591
+KK+LE IGRKLKKNSVALD+++FGE+++GK+EKLEAL+A VNNND+
Sbjct: 121 DKKVLETIGRKLKKNSVALDVVDFGEDEDGKSEKLEALVAAVNNNDT 167
>pir||T51606 probable 26S proteasome non-ATPase chain S5a [imported] - rice
gi|3550985|dbj|BAA32704.1| OsS5a [Oryza sativa (japonica
cultivar-group)] gi|17297981|dbj|BAB78488.1| 26S
proteasome regulatory particle non-ATPase subunit10
[Oryza sativa (japonica cultivar-group)]
Length = 402
Score = 281 bits (718), Expect = 6e-75
Identities = 137/167 (82%), Positives = 155/167 (92%)
Frame = +1
Query: 91 MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVR 270
MVLEATMICIDNSEWMRNGDY+PSRFQAQADAVNLICGAKTQSNPENTVGV+TMAGKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVMTMAGKGVR 60
Query: 271 VLVTPTSDLGKILACMHGLEMGGEMNLAAGIQVAQLALKHRQNKKQQQGMVVLAGSPVKH 450
VLVTPTSDLGKILACMHGLE+G E NLAA IQVAQLALKHRQNK+QQQ ++ GSPVK+
Sbjct: 61 VLVTPTSDLGKILACMHGLEVGAEANLAAAIQVAQLALKHRQNKRQQQRIIAFIGSPVKY 120
Query: 451 EKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAXVNNNDS 591
+KK+LE IG+KLKKN+VALDI++FGE D+ K EKLEAL++ VN++DS
Sbjct: 121 DKKVLETIGKKLKKNNVALDIVDFGETDDDKPEKLEALISAVNSSDS 167
>ref|NP_195575.1| 26S proteasome regulatory subunit S5A (RPN10); protein id:
At4g38630.1, supported by cDNA: 6757., supported by
cDNA: gi_1165205, supported by cDNA: gi_13430813,
supported by cDNA: gi_21281019 [Arabidopsis thaliana]
gi|1709794|sp|P55034|PSD4_ARATH 26S proteasome
non-ATPase regulatory subunit 4 (26S proteasome
regulatory subunit S5A) (Multiubiquitin chain binding
protein) gi|7487961|pir||T05691 multiubiquitin
chain-binding protein MBP1 - Arabidopsis thaliana
gi|1165206|gb|AAA85583.1| MBP1
gi|4467150|emb|CAB37519.1| multiubiquitin chain binding
protein (MBP1) [Arabidopsis thaliana]
gi|7270846|emb|CAB80527.1| multiubiquitin chain binding
protein (MBP1) [Arabidopsis thaliana]
gi|13430814|gb|AAK26029.1|AF360319_1 putative
multiubiquitin chain binding protein MBP1 [Arabidopsis
thaliana] gi|21281020|gb|AAM44937.1| putative
multiubiquitin chain binding protein MBP1 [Arabidopsis
thaliana]
Length = 386
Score = 275 bits (702), Expect = 4e-73
Identities = 132/167 (79%), Positives = 153/167 (91%), Gaps = 1/167 (0%)
Frame = +1
Query: 91 MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVR 270
MVLEATMICIDNSEWMRNGDY+PSR QAQ +AVNL+CGAKTQSNPENTVG+LTMAGKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 271 VLVTPTSDLGKILACMHGLEMGGEMNLAAGIQVAQLALKHRQNKKQQQGMVVLAGSPVKH 450
VL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+Q ++V AGSP+K+
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 451 EKKMLEMIGRKLKKNSVALDIINFGE-EDEGKTEKLEALLAXVNNND 588
EKK LE++G++LKKNSV+LDI+NFGE +DE K +KLEALL VNNND
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNND 167
>gb|AAM65985.1| multiubiquitin chain binding protein MBP1 [Arabidopsis thaliana]
Length = 386
Score = 275 bits (702), Expect = 4e-73
Identities = 132/167 (79%), Positives = 153/167 (91%), Gaps = 1/167 (0%)
Frame = +1
Query: 91 MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVR 270
MVLEATMICIDNSEWMRNGDY+PSR QAQ +AVNL+CGAKTQSNPENTVG+LTMAGKGVR
Sbjct: 1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVR 60
Query: 271 VLVTPTSDLGKILACMHGLEMGGEMNLAAGIQVAQLALKHRQNKKQQQGMVVLAGSPVKH 450
VL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+Q ++V AGSP+K+
Sbjct: 61 VLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKY 120
Query: 451 EKKMLEMIGRKLKKNSVALDIINFGE-EDEGKTEKLEALLAXVNNND 588
EKK LE++G++LKKNSV+LDI+NFGE +DE K +KLEALL VNNND
Sbjct: 121 EKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNND 167
>gb|AAF74210.1|AF076610_1 multiubiquitin chain-binding protein [Physcomitrella patens]
Length = 414
Score = 260 bits (664), Expect = 1e-68
Identities = 125/167 (74%), Positives = 149/167 (88%)
Frame = +1
Query: 91 MVLEATMICIDNSEWMRNGDYNPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVR 270
MVLEATM+C+DNSEWMRNGDY+P+RFQAQADA+NLICGAKTQSNPENTVGVLTMAGKG R
Sbjct: 1 MVLEATMVCMDNSEWMRNGDYSPTRFQAQADAINLICGAKTQSNPENTVGVLTMAGKGPR 60
Query: 271 VLVTPTSDLGKILACMHGLEMGGEMNLAAGIQVAQLALKHRQNKKQQQGMVVLAGSPVKH 450
VL+TPT+DLGKIL +HGLE+GGEM + +G+QVAQLALKHRQNK Q+Q +V+ AGSPV
Sbjct: 61 VLITPTNDLGKILQALHGLEVGGEMRMTSGVQVAQLALKHRQNKHQRQRIVLFAGSPVLA 120
Query: 451 EKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLAXVNNNDS 591
+K +LE +G+KLKKN+VALDI++FGE+D K EKLEALL VNN D+
Sbjct: 121 DKAVLEGMGKKLKKNNVALDIVSFGEDDGEKVEKLEALLNAVNNGDN 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,190,865
Number of Sequences: 1393205
Number of extensions: 10952934
Number of successful extensions: 32760
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 31278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32671
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
