Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012472A_C01 KMC012472A_c01
(740 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564805.1| homeodomain-containing protein HD1, putative; p... 114 2e-52
dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 ... 114 8e-50
gb|AAM67281.1| homeodomain-containing protein HD1, putative [Ara... 114 1e-49
pir||A96655 hypothetical protein F16P17.16 [imported] - Arabidop... 114 2e-49
dbj|BAB55660.1| KNOX family class 2 homeodomain protein [Oryza s... 96 3e-41
>ref|NP_564805.1| homeodomain-containing protein HD1, putative; protein id:
At1g62990.1, supported by cDNA: 106887., supported by
cDNA: gi_11878229 [Arabidopsis thaliana]
gi|11878230|gb|AAG40858.1|AF308451_1 homeodomain
transcription factor KNAT7 [Arabidopsis thaliana]
Length = 291
Score = 114 bits (285), Expect(2) = 2e-52
Identities = 65/94 (69%), Positives = 70/94 (74%), Gaps = 1/94 (1%)
Frame = +3
Query: 225 MQEPNLGMMGGGFTGDV-SASGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLP 401
MQE LGMMG GD +A +RQLK EIATHP+YEQLLAAHVACLRVATPIDQLP
Sbjct: 1 MQEAALGMMGATVGGDGDTAVVAEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLP 60
Query: 402 LIDAQLSQSHHLLRSIVSQHTHSLPPHDRQELDN 503
+I+AQLSQSHHLLRS S T HDR ELDN
Sbjct: 61 IIEAQLSQSHHLLRSYAS--TAVGYHHDRHELDN 92
Score = 114 bits (284), Expect(2) = 2e-52
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 3/79 (3%)
Frame = +1
Query: 508 LAQYVMVLCTFKDQLQQHVRVHAVEAVMAGRDIDNTLQALTGVSEGEGTGATMSDDEDDL 687
LAQYVMVLC+FK+QLQQHVRVHAVEAVMA R+I+N L +LTG + GEG+GATMS+DEDDL
Sbjct: 94 LAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDL 153
Query: 688 QMDFSLDQSSTE---GHDM 735
MDFS D S + GHDM
Sbjct: 154 PMDFSSDNSGVDFSGGHDM 172
>dbj|BAC42940.1| putative homeodomain transcription factor KNAT6 [Arabidopsis
thaliana]
Length = 284
Score = 114 bits (284), Expect(2) = 8e-50
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 3/79 (3%)
Frame = +1
Query: 508 LAQYVMVLCTFKDQLQQHVRVHAVEAVMAGRDIDNTLQALTGVSEGEGTGATMSDDEDDL 687
LAQYVMVLC+FK+QLQQHVRVHAVEAVMA R+I+N L +LTG + GEG+GATMS+DEDDL
Sbjct: 87 LAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDL 146
Query: 688 QMDFSLDQSSTE---GHDM 735
MDFS D S + GHDM
Sbjct: 147 PMDFSSDNSGVDFSGGHDM 165
Score = 105 bits (263), Expect(2) = 8e-50
Identities = 60/87 (68%), Positives = 65/87 (73%), Gaps = 1/87 (1%)
Frame = +3
Query: 246 MMGGGFTGDV-SASGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLS 422
MMG GD +A +RQLK EIATHP+YEQLLAAHVACLRVATPIDQLP+I+AQLS
Sbjct: 1 MMGATVGGDGDTAVVAEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLS 60
Query: 423 QSHHLLRSIVSQHTHSLPPHDRQELDN 503
QSHHLLRS S T HDR ELDN
Sbjct: 61 QSHHLLRSYAS--TAVGYHHDRHELDN 85
>gb|AAM67281.1| homeodomain-containing protein HD1, putative [Arabidopsis thaliana]
Length = 283
Score = 114 bits (284), Expect(2) = 1e-49
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 3/79 (3%)
Frame = +1
Query: 508 LAQYVMVLCTFKDQLQQHVRVHAVEAVMAGRDIDNTLQALTGVSEGEGTGATMSDDEDDL 687
LAQYVMVLC+FK+QLQQHVRVHAVEAVMA R+I+N L +LTG + GEG+GATMS+DEDDL
Sbjct: 86 LAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDL 145
Query: 688 QMDFSLDQSSTE---GHDM 735
MDFS D S + GHDM
Sbjct: 146 PMDFSSDNSGVDFSGGHDM 164
Score = 105 bits (262), Expect(2) = 1e-49
Identities = 59/86 (68%), Positives = 64/86 (73%), Gaps = 1/86 (1%)
Frame = +3
Query: 249 MGGGFTGDVSASG-DHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQ 425
MG GD A+ +RQLK EIATHP+YEQLLAAHVACLRVATPIDQLP+I+AQLSQ
Sbjct: 1 MGASVGGDGDAAVVAEQNRQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQ 60
Query: 426 SHHLLRSIVSQHTHSLPPHDRQELDN 503
SHHLLRS S T HDR ELDN
Sbjct: 61 SHHLLRSYAS--TAVGYHHDRHELDN 84
>pir||A96655 hypothetical protein F16P17.16 [imported] - Arabidopsis thaliana
gi|8493589|gb|AAF75812.1|AC011000_15 Strong similarity
to Homeobox Protein HD1 from Brassica napus gi|1170191,
and contains a lactate/malate dehydrogenase PF|00056
domain. [Arabidopsis thaliana]
Length = 283
Score = 114 bits (284), Expect(2) = 2e-49
Identities = 57/79 (72%), Positives = 66/79 (83%), Gaps = 3/79 (3%)
Frame = +1
Query: 508 LAQYVMVLCTFKDQLQQHVRVHAVEAVMAGRDIDNTLQALTGVSEGEGTGATMSDDEDDL 687
LAQYVMVLC+FK+QLQQHVRVHAVEAVMA R+I+N L +LTG + GEG+GATMS+DEDDL
Sbjct: 86 LAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDL 145
Query: 688 QMDFSLDQSSTE---GHDM 735
MDFS D S + GHDM
Sbjct: 146 PMDFSSDNSGVDFSGGHDM 164
Score = 104 bits (260), Expect(2) = 2e-49
Identities = 57/82 (69%), Positives = 63/82 (76%)
Frame = +3
Query: 258 GFTGDVSASGDHHHRQLKAEIATHPLYEQLLAAHVACLRVATPIDQLPLIDAQLSQSHHL 437
G GD + + + RQLK EIATHP+YEQLLAAHVACLRVATPIDQLP+I+AQLSQSHHL
Sbjct: 6 GGDGDTAVVAEQN-RQLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHL 64
Query: 438 LRSIVSQHTHSLPPHDRQELDN 503
LRS S T HDR ELDN
Sbjct: 65 LRSYAS--TAVGYHHDRHELDN 84
>dbj|BAB55660.1| KNOX family class 2 homeodomain protein [Oryza sativa (japonica
cultivar-group)]
Length = 314
Score = 95.9 bits (237), Expect(2) = 3e-41
Identities = 52/98 (53%), Positives = 61/98 (62%), Gaps = 1/98 (1%)
Frame = +3
Query: 213 GVGEMQEPNLGMMGGGFTGDVSASGDHHHRQL-KAEIATHPLYEQLLAAHVACLRVATPI 389
G GE + +A+ + RQL K EIA HPL EQL+AAHV CLRVATPI
Sbjct: 21 GGGECSSSSATAAAAAAAAAAAAAAEAEERQLLKGEIAVHPLCEQLVAAHVGCLRVATPI 80
Query: 390 DQLPLIDAQLSQSHHLLRSIVSQHTHSLPPHDRQELDN 503
D LPLIDAQL+QS LL S + H L PHD+QELD+
Sbjct: 81 DHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDKQELDS 118
Score = 95.5 bits (236), Expect(2) = 3e-41
Identities = 49/85 (57%), Positives = 67/85 (78%), Gaps = 2/85 (2%)
Frame = +1
Query: 490 KNLITVLAQYVMVLCTFKDQLQQHVRVHAVEAVMAGRDIDNTLQALTGVSEGEGTGATMS 669
+ L + LAQY+M+LC+F++QLQQHVRVHAVEAVMA R+I+ +LQ LTG + EGTGATMS
Sbjct: 114 QELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGATMS 173
Query: 670 DDEDDL--QMDFSLDQSSTEGHDMM 738
+DED+ ++ +D S +GHD+M
Sbjct: 174 EDEDETAPMLEGPMDMGS-DGHDLM 197
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 688,117,543
Number of Sequences: 1393205
Number of extensions: 16831209
Number of successful extensions: 95966
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 62095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79207
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
