Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012461A_C01 KMC012461A_c01
(599 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564420.1| expressed protein; protein id: At1g33230.1, sup... 84 2e-15
pir||A86456 unknown protein [imported] - Arabidopsis thaliana gi... 84 2e-15
ref|NP_567356.1| putative protein; protein id: At4g10430.1, supp... 81 1e-14
dbj|BAC65389.1| OJ1349_D05.9 [Oryza sativa (japonica cultivar-gr... 77 2e-13
gb|AAF97352.1|AC021045_9 Unknown Protein [Arabidopsis thaliana] 65 9e-10
>ref|NP_564420.1| expressed protein; protein id: At1g33230.1, supported by cDNA:
8976., supported by cDNA: gi_21281184 [Arabidopsis
thaliana] gi|15810379|gb|AAL07077.1| unknown protein
[Arabidopsis thaliana] gi|21281185|gb|AAM45132.1|
unknown protein [Arabidopsis thaliana]
gi|21617930|gb|AAM66980.1| unknown [Arabidopsis
thaliana] gi|23397137|gb|AAN31852.1| unknown protein
[Arabidopsis thaliana]
Length = 347
Score = 83.6 bits (205), Expect = 2e-15
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = -1
Query: 599 LRTAFVGVISEWQVIFCGVLLVLMAIGNFANTVQTLLAKSRFKAKMRKSKSKQRL 435
LRT +GV++EWQV+ CG+LLV+MAIGNF NTV+TL+ KSRFKAKM++SKS+ L
Sbjct: 293 LRTVLMGVVAEWQVLVCGILLVVMAIGNFINTVETLMVKSRFKAKMKRSKSRAEL 347
>pir||A86456 unknown protein [imported] - Arabidopsis thaliana
gi|12322570|gb|AAG51284.1|AC027035_7 unknown protein
[Arabidopsis thaliana]
Length = 387
Score = 83.6 bits (205), Expect = 2e-15
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = -1
Query: 599 LRTAFVGVISEWQVIFCGVLLVLMAIGNFANTVQTLLAKSRFKAKMRKSKSKQRL 435
LRT +GV++EWQV+ CG+LLV+MAIGNF NTV+TL+ KSRFKAKM++SKS+ L
Sbjct: 333 LRTVLMGVVAEWQVLVCGILLVVMAIGNFINTVETLMVKSRFKAKMKRSKSRAEL 387
>ref|NP_567356.1| putative protein; protein id: At4g10430.1, supported by cDNA:
gi_16648994, supported by cDNA: gi_20259955 [Arabidopsis
thaliana] gi|16648995|gb|AAL24349.1| putative protein
[Arabidopsis thaliana] gi|20259956|gb|AAM13325.1|
putative protein [Arabidopsis thaliana]
Length = 347
Score = 80.9 bits (198), Expect = 1e-14
Identities = 36/56 (64%), Positives = 47/56 (83%)
Frame = -1
Query: 599 LRTAFVGVISEWQVIFCGVLLVLMAIGNFANTVQTLLAKSRFKAKMRKSKSKQRLN 432
LR GV++EWQV+ CG+LLV+MA+GNF NTV+TL+AKSR KAKM++SKS+ LN
Sbjct: 292 LRKTVTGVVNEWQVMVCGILLVVMAVGNFINTVETLMAKSRVKAKMKRSKSRAELN 347
>dbj|BAC65389.1| OJ1349_D05.9 [Oryza sativa (japonica cultivar-group)]
Length = 338
Score = 76.6 bits (187), Expect = 2e-13
Identities = 35/47 (74%), Positives = 40/47 (84%)
Frame = -1
Query: 599 LRTAFVGVISEWQVIFCGVLLVLMAIGNFANTVQTLLAKSRFKAKMR 459
LRTA G++ EWQV+ CGVLL+ MAIGNFANTV TL+AKSRFKAK R
Sbjct: 267 LRTAHTGIVPEWQVVVCGVLLIAMAIGNFANTVDTLMAKSRFKAKKR 313
>gb|AAF97352.1|AC021045_9 Unknown Protein [Arabidopsis thaliana]
Length = 247
Score = 64.7 bits (156), Expect = 9e-10
Identities = 29/43 (67%), Positives = 38/43 (87%)
Frame = -1
Query: 563 QVIFCGVLLVLMAIGNFANTVQTLLAKSRFKAKMRKSKSKQRL 435
+V+ CG+LLV+MAIGNF NTV+TL+ KSRFKAKM++SKS+ L
Sbjct: 205 KVLVCGILLVVMAIGNFINTVETLMVKSRFKAKMKRSKSRAEL 247
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,510,298
Number of Sequences: 1393205
Number of extensions: 9248993
Number of successful extensions: 19582
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 19190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19579
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
