Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012426A_C01 KMC012426A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB33422.1| putative senescence-associated protein [Pisum sa... 199 2e-50
ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25... 185 4e-46
gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana] 181 5e-45
ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39... 181 7e-45
dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa ... 179 2e-44
>dbj|BAB33422.1| putative senescence-associated protein [Pisum sativum]
Length = 279
Score = 199 bits (506), Expect = 2e-50
Identities = 95/116 (81%), Positives = 105/116 (89%)
Frame = -1
Query: 560 KEKKELDAEVHRKYIFGGHVASYMKTLTEDEPEKYQSHFSEYIKRGIEADGLEELYKKVH 381
KEKKELDAEVHRKYIFGGHV +YMKTL EDEPEKYQ+HFS+YIK+GIEADG+EELYKKVH
Sbjct: 164 KEKKELDAEVHRKYIFGGHVTAYMKTLIEDEPEKYQTHFSQYIKKGIEADGIEELYKKVH 223
Query: 380 AAIRADPSTKKSGKPEPKEHKRYNLKKLTYDERKNQLIARLPALNSAAGEADDDDE 213
AAIRADP+ KK+ K PKEHKRYNLKKLTYDER+ +LIARL ALNSA E +DDDE
Sbjct: 224 AAIRADPANKKAEKQPPKEHKRYNLKKLTYDERRTKLIARLEALNSAVDEDEDDDE 279
>ref|NP_566767.1| ribosomal protein, putative; protein id: At3g25520.1, supported by
cDNA: 32753., supported by cDNA: gi_15809787, supported
by cDNA: gi_17473631 [Arabidopsis thaliana]
gi|15809788|gb|AAL06822.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|17473632|gb|AAL38279.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|20148745|gb|AAM10263.1| 60S ribosomal protein L5
[Arabidopsis thaliana] gi|22530962|gb|AAM96985.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23198406|gb|AAN15730.1| putative ribosomal protein
[Arabidopsis thaliana] gi|27311643|gb|AAO00787.1|
ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 185 bits (469), Expect = 4e-46
Identities = 87/120 (72%), Positives = 103/120 (85%)
Frame = -1
Query: 560 KEKKELDAEVHRKYIFGGHVASYMKTLTEDEPEKYQSHFSEYIKRGIEADGLEELYKKVH 381
KE K+LDAE+HR YI+GGHV++YMK L EDEPEK Q+HFS YIK+G+EA+ +EELYKKVH
Sbjct: 184 KENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVH 243
Query: 380 AAIRADPSTKKSGKPEPKEHKRYNLKKLTYDERKNQLIARLPALNSAAGEADDDDEDDRE 201
AAIRADP+ KK+ KP PK+HKRYNLKKLTY+ERKN+LI R+ ALN A G DDDDEDD E
Sbjct: 244 AAIRADPNPKKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDDEE 301
>gb|AAM64753.1| ribosomal protein, putative [Arabidopsis thaliana]
Length = 301
Score = 181 bits (459), Expect = 5e-45
Identities = 84/120 (70%), Positives = 102/120 (85%)
Frame = -1
Query: 560 KEKKELDAEVHRKYIFGGHVASYMKTLTEDEPEKYQSHFSEYIKRGIEADGLEELYKKVH 381
KE K+LDAE+HR YI+GGHV++YMK L EDEPEK Q+HFS YIK+G+EA+ +EELYKKVH
Sbjct: 184 KENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEELYKKVH 243
Query: 380 AAIRADPSTKKSGKPEPKEHKRYNLKKLTYDERKNQLIARLPALNSAAGEADDDDEDDRE 201
AAIRA P+ +K+ KP PK+HKRYNLKKLTY+ERKN+LI R+ ALN A G DDDDEDD +
Sbjct: 244 AAIRAXPNXRKTVKPAPKQHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDDEZ 301
>ref|NP_198790.1| ribosomal protein L5 - like; protein id: At5g39740.1, supported by
cDNA: gi_19310481, supported by cDNA: gi_20260447
[Arabidopsis thaliana] gi|19884108|sp|P49227|RL5_ARATH
60S ribosomal protein L5 gi|10177974|dbj|BAB11380.1| 60S
ribosomal protein L5 [Arabidopsis thaliana]
gi|19310482|gb|AAL84975.1| AT5g39740/MKM21_30
[Arabidopsis thaliana] gi|20260448|gb|AAM13122.1|
ribosomal protein L5 - like [Arabidopsis thaliana]
Length = 301
Score = 181 bits (458), Expect = 7e-45
Identities = 85/120 (70%), Positives = 102/120 (84%)
Frame = -1
Query: 560 KEKKELDAEVHRKYIFGGHVASYMKTLTEDEPEKYQSHFSEYIKRGIEADGLEELYKKVH 381
KE K+LDAE+HR YI+GGHV++YMK L EDEPEK Q+HFS YIK+G+EA+ +EE+YKKVH
Sbjct: 184 KENKQLDAEIHRNYIYGGHVSNYMKLLGEDEPEKLQTHFSAYIKKGVEAESIEEMYKKVH 243
Query: 380 AAIRADPSTKKSGKPEPKEHKRYNLKKLTYDERKNQLIARLPALNSAAGEADDDDEDDRE 201
AAIRA+P+ KK+ K PKEHKRYNLKKLTY+ERKN+LI R+ ALN A G DDDDEDD E
Sbjct: 244 AAIRAEPNHKKTEKSAPKEHKRYNLKKLTYEERKNKLIERVKALNGAGG--DDDDEDDEE 301
>dbj|BAC06272.1| putative 60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)] gi|22093591|dbj|BAC06887.1| putative
60S ribosomal protein L5 [Oryza sativa (japonica
cultivar-group)]
Length = 304
Score = 179 bits (455), Expect = 2e-44
Identities = 80/120 (66%), Positives = 104/120 (86%)
Frame = -1
Query: 560 KEKKELDAEVHRKYIFGGHVASYMKTLTEDEPEKYQSHFSEYIKRGIEADGLEELYKKVH 381
K++K+LD+++HRKYI+GGHVA YM+++ E+EPEK+Q+HFSEY+K+GI+ADG+E LYKKVH
Sbjct: 185 KDEKQLDSDIHRKYIYGGHVADYMRSMAEEEPEKFQAHFSEYLKKGIDADGMESLYKKVH 244
Query: 380 AAIRADPSTKKSGKPEPKEHKRYNLKKLTYDERKNQLIARLPALNSAAGEADDDDEDDRE 201
AAIRADP+ KS K EP HKRYNLKKLTY++RK L+ RL ALNS+AG DDD+E+D E
Sbjct: 245 AAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEEDDE 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,835,178
Number of Sequences: 1393205
Number of extensions: 9493606
Number of successful extensions: 40598
Number of sequences better than 10.0: 150
Number of HSP's better than 10.0 without gapping: 35746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39807
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
