Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012413A_C02 KMC012413A_c02
(752 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_654854.1| hypothetical protein predicted by GeneMark [Bac... 35 1.2
ref|NP_219909.1| GutQ/KpsF Family Sugar-P Isomerase [Chlamydia t... 33 3.4
gb|EAA22347.1| hypothetical protein [Plasmodium yoelii yoelii] 32 9.8
ref|XP_240324.1| hypothetical protein XP_240324 [Rattus norvegicus] 32 9.8
dbj|BAB11096.1| contains similarity to~gene_id:MPL12.21~pir||T14... 32 9.8
>ref|NP_654854.1| hypothetical protein predicted by GeneMark [Bacillus anthracis
A2012]
Length = 146
Score = 35.0 bits (79), Expect = 1.2
Identities = 16/43 (37%), Positives = 28/43 (64%)
Frame = +2
Query: 305 DGEKIIHNSQILSKGEKRKKISNDRGSSYKLVNSNPIISVQPV 433
+GE + HN ILSK E K++ + RG+ L++ +P+ ++ PV
Sbjct: 67 EGEILFHNENILSKSE--KELRSIRGNQISLISQDPMSALNPV 107
>ref|NP_219909.1| GutQ/KpsF Family Sugar-P Isomerase [Chlamydia trachomatis]
gi|7388411|sp|O84404|Y399_CHLTR Hypothetical protein
CT399 gi|7429327|pir||B71519 probable gutQ/kpsF
sugar-phosphate isomerase - Chlamydia trachomatis
(serotype D, strain UW3/Cx) gi|3328826|gb|AAC67996.1|
GutQ/KpsF Family Sugar-P Isomerase [Chlamydia
trachomatis]
Length = 328
Score = 33.5 bits (75), Expect = 3.4
Identities = 21/56 (37%), Positives = 28/56 (49%)
Frame = -1
Query: 413 WDCY*QVCRKILCHCLFFFFSPLSRGSGCCG*FSPHHCKFKLSIKVIKFGPKAFFI 246
+DC Q+ K+LCH FFS + + SGC KL + FG KAFF+
Sbjct: 31 YDCVHQLTEKLLCHQGSLFFSGIGK-SGCIA--------RKLVATMQSFGEKAFFL 77
>gb|EAA22347.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 736
Score = 32.0 bits (71), Expect = 9.8
Identities = 15/46 (32%), Positives = 24/46 (51%)
Frame = +2
Query: 302 NDGEKIIHNSQILSKGEKRKKISNDRGSSYKLVNSNPIISVQPVHR 439
ND + HN ++LS ++ KI+ + SSY +N N + HR
Sbjct: 198 NDSIPLFHNDELLSLDNEQNKIAIKKASSYTNINYNDTFIKKNKHR 243
>ref|XP_240324.1| hypothetical protein XP_240324 [Rattus norvegicus]
Length = 680
Score = 32.0 bits (71), Expect = 9.8
Identities = 15/59 (25%), Positives = 34/59 (57%)
Frame = +2
Query: 347 GEKRKKISNDRGSSYKLVNSNPIISVQPVHRREACSDHNKQSQISTPRTLLDSSSTISL 523
GE ++I++D+ S +L S+ I+ + + AC + + ++S P+TL S++ ++
Sbjct: 30 GELNERINDDQDVSRRLFMSHQIVKISCI---PACKEEARNKKLSLPQTLASGSNSANI 85
>dbj|BAB11096.1| contains similarity to~gene_id:MPL12.21~pir||T14814 [Arabidopsis
thaliana]
Length = 293
Score = 32.0 bits (71), Expect = 9.8
Identities = 21/54 (38%), Positives = 26/54 (47%)
Frame = -2
Query: 463 VVVTARFPPVYRLH*DYGIAINKFVGRSSVIAYFFSFLPFREDLAVVDDFLPII 302
V + P VYRL + GI I + + + LPF E LAV DD PII
Sbjct: 233 VAIIDNCPQVYRLQINNGIPIKSWYDDPTDDG-LITILPFLETLAVADDVRPII 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 650,411,140
Number of Sequences: 1393205
Number of extensions: 14477518
Number of successful extensions: 34549
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 32934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34533
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
