Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC012389A_C01 KMC012389A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680719.1| unknown protein; protein id: At4g18372.1 [Arabi... 164 1e-39
gb|AAL92641.2|AC115680_11 similar to Arabidopsis thaliana (Mouse... 49 5e-05
ref|XP_212806.1| similar to small nuclear ribonucleoprotein-asso... 48 1e-04
pir||A35448 small nuclear ribonucleoprotein-associated protein N... 47 2e-04
gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana] 47 2e-04
>ref|NP_680719.1| unknown protein; protein id: At4g18372.1 [Arabidopsis thaliana]
Length = 112
Score = 164 bits (414), Expect = 1e-39
Identities = 81/112 (72%), Positives = 93/112 (82%), Gaps = 2/112 (1%)
Frame = +1
Query: 199 MEQEAEQPIPVQVGTSDSSS--RVSRVRKLLWRRMRVGIKDGRFFLGGFYCIDKQGNIIL 372
MEQ AE+ + TS+ S +SR+RKLL+R+M VGIKDGRFFLG F+CIDKQGNIIL
Sbjct: 1 MEQAAERSSTIVASTSEGSDFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNIIL 60
Query: 373 QDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRATCHVDCSIDEQLSLLSLRE 528
QD VEYRS RRSSPSP EQRCLG+ILIPSSCR +CHVDCSIDEQLSL+ L+E
Sbjct: 61 QDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQLKE 112
>gb|AAL92641.2|AC115680_11 similar to Arabidopsis thaliana (Mouse-ear cress). Similarity to
small nuclear ribonucleoprotein (Unknown protein)
(Hypothetical 27.0 kDa protein) [Dictyostelium
discoideum]
Length = 265
Score = 49.3 bits (116), Expect = 5e-05
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 292 RMRVGIKDGRFFLGGFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGLILIPSSCR 468
RMRV I+DGR +G F DK N+++ DA E+R R+ E+ R LG+ILI
Sbjct: 8 RMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGMILIRGETV 67
Query: 469 ATCHVDCSIDEQLSL 513
+ V+ E+ L
Sbjct: 68 VSMSVEAPPPEEAKL 82
>ref|XP_212806.1| similar to small nuclear ribonucleoprotein-associated protein N -
rat [Rattus norvegicus]
Length = 240
Score = 47.8 bits (112), Expect = 1e-04
Identities = 25/57 (43%), Positives = 34/57 (58%), Gaps = 3/57 (5%)
Frame = +1
Query: 292 RMRVGIKDGRFFLGGFYCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILI 453
RMR ++DGRFF+G F DK N+IL D E+R + P E+R LGL+L+
Sbjct: 16 RMRCILQDGRFFIGTFKAFDKHRNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
>pir||A35448 small nuclear ribonucleoprotein-associated protein N - rat
gi|206694|gb|AAA42059.1| snRNP-associated polypeptide N
Length = 240
Score = 47.4 bits (111), Expect = 2e-04
Identities = 25/57 (43%), Positives = 34/57 (58%), Gaps = 3/57 (5%)
Frame = +1
Query: 292 RMRVGIKDGRFFLGGFYCIDKQGNIILQDAVEYRSTR---RSSPSPMEQRCLGLILI 453
RMR ++DGRFF+G F DK N+IL D E+R + P E+R LGL+L+
Sbjct: 16 RMRCILQDGRFFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 72
>gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 47.4 bits (111), Expect = 2e-04
Identities = 26/74 (35%), Positives = 43/74 (57%), Gaps = 6/74 (8%)
Frame = +1
Query: 250 SSSRVSRVRKLLWRRMRVGIKDGRFFLGGFYCIDKQGNIILQDAVEYR------STRRSS 411
S S+ S++ + + RMRV I+DGR +G F D+ N++L D E+R +++S
Sbjct: 2 SMSKSSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTS 61
Query: 412 PSPMEQRCLGLILI 453
E+R LGL+L+
Sbjct: 62 EEREERRTLGLVLL 75
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 643,659,065
Number of Sequences: 1393205
Number of extensions: 15255914
Number of successful extensions: 77935
Number of sequences better than 10.0: 132
Number of HSP's better than 10.0 without gapping: 60381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76516
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
